Hb_002681_100

Information

Type -
Description -
Location Contig2681: 74112-77237
Sequence    

Annotation

kegg
ID rcu:RCOM_1065080
description ATP binding protein, putative
nr
ID XP_012071861.1
description PREDICTED: glucuronokinase 1 [Jatropha curcas]
swissprot
ID Q93ZC9
description Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1
trembl
ID A0A067LPF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10239 PE=3 SV=1
Gene Ontology
ID GO:0005737
description glucuronokinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27927: 74011-77131
cDNA
(Sanger)
(ID:Location)		 048_H07.ab1: 74011-75256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_100 0.0 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
2 Hb_003057_060 0.0539627595 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013575_010 0.0612582355 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
4 Hb_004058_030 0.0638148227 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
5 Hb_001511_060 0.0664651799 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
6 Hb_003304_020 0.0672906825 - - Polyadenylate-binding protein RBP47C [Glycine soja]
7 Hb_006573_190 0.0674212745 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_003582_060 0.0695214529 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_005271_040 0.0702579532 - - PREDICTED: serine racemase [Jatropha curcas]
10 Hb_002641_060 0.0721018834 - - prefoldin subunit, putative [Ricinus communis]
11 Hb_000948_230 0.072463296 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_003994_230 0.0736342654 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
13 Hb_000774_020 0.0749378039 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
14 Hb_001300_150 0.0758600687 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
15 Hb_000003_230 0.0759932024 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
16 Hb_004109_220 0.0776890854 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
17 Hb_000300_500 0.0777830446 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
18 Hb_000375_350 0.0780572104 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
19 Hb_024439_010 0.0788014823 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_000666_100 0.0789410108 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_002681_100 Hb_002681_100 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190 Hb_003057_060--Hb_013575_010 Hb_000666_100 Hb_000666_100 Hb_003057_060--Hb_000666_100 Hb_000948_230 Hb_000948_230 Hb_003057_060--Hb_000948_230 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_004627_040 Hb_004627_040 Hb_003057_060--Hb_004627_040 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_013575_010--Hb_000666_100 Hb_004058_030--Hb_003304_020 Hb_000003_230 Hb_000003_230 Hb_004058_030--Hb_000003_230 Hb_006615_240 Hb_006615_240 Hb_004058_030--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_003304_020--Hb_000003_230 Hb_003304_020--Hb_003582_060 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94487 6.13164 13.5494 13.4446 9.56084 7.00732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.09459 14.4673 12.967 9.81485 7.95885

CAGE analysis