Hb_001009_270

Information

Type -
Description -
Location Contig1009: 164404-168145
Sequence    

Annotation

kegg
ID rcu:RCOM_1507340
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012079902.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
swissprot
ID Q93Y35
description 26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana GN=RPN7 PE=1 SV=1
trembl
ID A0A067K415
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11347 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00539: 164427-168121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_270 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
2 Hb_004907_080 0.0536379012 - - zinc finger protein, putative [Ricinus communis]
3 Hb_032208_090 0.0553012679 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
4 Hb_003177_030 0.0554915142 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
5 Hb_000777_040 0.0573719605 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
6 Hb_001799_210 0.0585575108 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
7 Hb_000465_160 0.0615461771 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
8 Hb_011344_210 0.0663871497 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
9 Hb_000451_010 0.0668182053 - - secretory carrier membrane protein, putative [Ricinus communis]
10 Hb_019280_040 0.070809648 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005779_060 0.0709180611 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
12 Hb_000876_070 0.0717506579 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_000175_460 0.0719295448 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_002830_030 0.0720061151 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
15 Hb_005144_160 0.0721454347 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
16 Hb_000019_030 0.0723943472 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
17 Hb_032202_190 0.0735020761 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
18 Hb_007691_030 0.0745333468 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
19 Hb_000580_180 0.0763085548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000003_250 0.0764018221 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001009_270 Hb_001009_270 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_032208_090 Hb_032208_090 Hb_001009_270--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_000451_010 Hb_000451_010 Hb_004907_080--Hb_000451_010 Hb_011671_240 Hb_011671_240 Hb_004907_080--Hb_011671_240 Hb_004907_080--Hb_032208_090 Hb_004907_080--Hb_003177_030 Hb_004907_080--Hb_000777_040 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_000985_030 Hb_000985_030 Hb_000777_040--Hb_000985_030 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_000206_210 Hb_000206_210 Hb_000777_040--Hb_000206_210 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020 Hb_001799_210--Hb_000465_160 Hb_000003_250 Hb_000003_250 Hb_001799_210--Hb_000003_250 Hb_001799_210--Hb_003177_030 Hb_001799_210--Hb_032208_090 Hb_001799_210--Hb_011344_210 Hb_001300_150 Hb_001300_150 Hb_000465_160--Hb_001300_150 Hb_000260_030 Hb_000260_030 Hb_000465_160--Hb_000260_030 Hb_000465_160--Hb_003177_030 Hb_004109_170 Hb_004109_170 Hb_000465_160--Hb_004109_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.8913 31.4176 47.9635 54.1081 60.7967 69.3947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.2922 78.3806 92.2617 41.215 35.7843

CAGE analysis