Hb_001004_070

Information

Type -
Description -
Location Contig1004: 175345-186035
Sequence    

Annotation

kegg
ID rcu:RCOM_1445010
description hypothetical protein
nr
ID XP_002512825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1445010 PE=4 SV=1
Gene Ontology
ID GO:0005783
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00282: 175621-186024 , PASA_asmbl_00283: 176699-178233 , PASA_asmbl_00284: 176702-186019 , PASA_asmbl_00285: 184146-184296
cDNA
(Sanger)
(ID:Location)		 005_L17.ab1: 181006-185723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001936_130 0.0611631631 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
3 Hb_005291_050 0.0685743855 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
4 Hb_003025_100 0.0722410395 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
5 Hb_012498_010 0.0735547292 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_027380_220 0.0751145504 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
7 Hb_024128_020 0.0777632811 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
8 Hb_000260_010 0.0782097991 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
9 Hb_000207_050 0.0788330575 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
10 Hb_029879_070 0.0804268692 - - PREDICTED: phospholipase A I [Jatropha curcas]
11 Hb_000352_120 0.0804305597 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
12 Hb_000212_380 0.0804477549 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
13 Hb_000072_320 0.0823188001 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
14 Hb_002809_050 0.0849216891 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
15 Hb_002909_140 0.0859419594 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
16 Hb_001269_330 0.086641743 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
17 Hb_003177_030 0.0871791946 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
18 Hb_000260_350 0.0881717029 - - conserved hypothetical protein [Ricinus communis]
19 Hb_026198_070 0.0888555581 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
20 Hb_007460_020 0.0889401336 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001004_070 Hb_001004_070 Hb_001936_130 Hb_001936_130 Hb_001004_070--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_003025_100 Hb_003025_100 Hb_001004_070--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001004_070--Hb_012498_010 Hb_027380_220 Hb_027380_220 Hb_001004_070--Hb_027380_220 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_001936_130--Hb_003025_100 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_001818_100 Hb_001818_100 Hb_003025_100--Hb_001818_100 Hb_000260_350 Hb_000260_350 Hb_003025_100--Hb_000260_350 Hb_003025_100--Hb_012498_010 Hb_003025_100--Hb_091296_010 Hb_000116_270 Hb_000116_270 Hb_003025_100--Hb_000116_270 Hb_006478_020 Hb_006478_020 Hb_003025_100--Hb_006478_020 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_027380_220--Hb_000260_010 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9578 9.27199 18.6622 29.1736 21.0455 22.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3478 18.4127 31.9208 20.3536 21.7305

CAGE analysis