Hb_029510_050

Information

Type -
Description -
Location Contig29510: 19515-27310
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05060g
description POPTRDRAFT_553737; hypothetical protein
nr
ID XP_012073378.1
description PREDICTED: golgin candidate 5 [Jatropha curcas]
swissprot
ID Q0WVL7
description Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1
trembl
ID A0A067KQL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06309 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30860: 19634-21371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_050 0.0 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
2 Hb_000254_090 0.0609004456 - - PREDICTED: la protein 2 [Jatropha curcas]
3 Hb_029879_070 0.0616634899 - - PREDICTED: phospholipase A I [Jatropha curcas]
4 Hb_001357_020 0.0660781779 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
5 Hb_002518_260 0.0662144667 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
6 Hb_005686_090 0.0665026059 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
7 Hb_002685_210 0.0681531627 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
8 Hb_000172_290 0.0695410096 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
9 Hb_009486_140 0.0700989675 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
10 Hb_156279_020 0.0714698405 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
11 Hb_007479_040 0.0719967977 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001696_010 0.073045104 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
13 Hb_005291_050 0.0759449885 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
14 Hb_005054_110 0.0759809092 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
15 Hb_002496_010 0.0764213728 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
16 Hb_000072_320 0.0765081937 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
17 Hb_000207_050 0.0769010356 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
18 Hb_002263_020 0.0769295011 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
19 Hb_000028_480 0.0770305272 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
20 Hb_026198_070 0.0779324915 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_029510_050 Hb_029510_050 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210 Hb_000254_090--Hb_029879_070 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_029879_070--Hb_002685_210 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_002600_150 Hb_002600_150 Hb_001357_020--Hb_002600_150 Hb_001357_020--Hb_002518_260 Hb_000388_090 Hb_000388_090 Hb_001357_020--Hb_000388_090 Hb_000976_300 Hb_000976_300 Hb_001357_020--Hb_000976_300 Hb_001008_120 Hb_001008_120 Hb_001357_020--Hb_001008_120 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_000792_010 Hb_000792_010 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_005736_020 Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_005686_090--Hb_002518_260 Hb_005686_090--Hb_001008_120 Hb_028912_050 Hb_028912_050 Hb_005686_090--Hb_028912_050 Hb_002685_210--Hb_000172_290 Hb_005490_030 Hb_005490_030 Hb_002685_210--Hb_005490_030 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7804 7.7002 7.93111 12.5247 12.1401 11.6805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3117 12.8286 17.3723 12.6683 17.0122

CAGE analysis