Hb_001472_060

Information

Type -
Description -
Location Contig1472: 70524-89382
Sequence    

Annotation

kegg
ID rcu:RCOM_0955780
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012066368.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
swissprot
ID Q9C585
description Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=2 SV=2
trembl
ID A0A067L3C7
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_23913 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin carboxyl-terminal hydrolase 8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11922: 70528-84669 , PASA_asmbl_11923: 73856-74316 , PASA_asmbl_11924: 85142-89437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_060 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
2 Hb_003531_080 0.0638531664 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
3 Hb_004097_130 0.084045369 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
4 Hb_021409_180 0.0844987924 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
5 Hb_000808_050 0.086151246 - - exonuclease, putative [Ricinus communis]
6 Hb_001205_120 0.088339211 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
7 Hb_000019_150 0.0885426224 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
8 Hb_000136_110 0.0904595099 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
9 Hb_000103_480 0.091685051 - - -
10 Hb_006816_090 0.0922261945 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
11 Hb_170416_010 0.092777692 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
12 Hb_000599_180 0.0956000867 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_010931_070 0.0992078259 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
14 Hb_007007_120 0.1000090868 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
15 Hb_000637_110 0.1014328891 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
16 Hb_000441_220 0.102528904 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000340_420 0.1038479184 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
18 Hb_001158_070 0.1042350219 - - Protein DEK, putative [Ricinus communis]
19 Hb_000205_190 0.1050026864 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_005000_190 0.1056763658 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]

Gene co-expression network

sample Hb_001472_060 Hb_001472_060 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_021409_180 Hb_021409_180 Hb_001472_060--Hb_021409_180 Hb_000808_050 Hb_000808_050 Hb_001472_060--Hb_000808_050 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150 Hb_001761_120 Hb_001761_120 Hb_003531_080--Hb_001761_120 Hb_170416_010 Hb_170416_010 Hb_003531_080--Hb_170416_010 Hb_007007_120 Hb_007007_120 Hb_003531_080--Hb_007007_120 Hb_000340_420 Hb_000340_420 Hb_003531_080--Hb_000340_420 Hb_007290_030 Hb_007290_030 Hb_003531_080--Hb_007290_030 Hb_004097_130--Hb_003531_080 Hb_154471_020 Hb_154471_020 Hb_004097_130--Hb_154471_020 Hb_000103_480 Hb_000103_480 Hb_004097_130--Hb_000103_480 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040 Hb_000599_180 Hb_000599_180 Hb_021409_180--Hb_000599_180 Hb_021409_180--Hb_001205_120 Hb_023344_120 Hb_023344_120 Hb_021409_180--Hb_023344_120 Hb_032986_010 Hb_032986_010 Hb_021409_180--Hb_032986_010 Hb_021409_180--Hb_000808_050 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_000441_220 Hb_000441_220 Hb_001205_120--Hb_000441_220 Hb_002044_150 Hb_002044_150 Hb_001205_120--Hb_002044_150 Hb_001584_140 Hb_001584_140 Hb_001205_120--Hb_001584_140 Hb_001205_120--Hb_023344_120 Hb_000915_260 Hb_000915_260 Hb_001205_120--Hb_000915_260 Hb_168978_030 Hb_168978_030 Hb_001205_120--Hb_168978_030 Hb_000025_030 Hb_000025_030 Hb_000019_150--Hb_000025_030 Hb_001143_190 Hb_001143_190 Hb_000019_150--Hb_001143_190 Hb_000019_150--Hb_000808_050 Hb_004007_220 Hb_004007_220 Hb_000019_150--Hb_004007_220 Hb_010931_070 Hb_010931_070 Hb_000019_150--Hb_010931_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.45464 4.35599 9.46383 5.97266 4.67609 6.7492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57732 3.05759 8.56994 4.04066 6.42868

CAGE analysis