Hb_003688_040

Information

Type -
Description -
Location Contig3688: 22150-23484
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37957: 21640-22243 , PASA_asmbl_37959: 22258-23399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_040 0.0 - - -
2 Hb_004097_130 0.1059491072 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
3 Hb_002485_030 0.1181740652 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
4 Hb_000108_050 0.1243929207 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
5 Hb_024836_010 0.1256714249 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
6 Hb_000022_190 0.1287420448 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
7 Hb_000635_090 0.1319339093 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_000239_060 0.132080985 - - conserved hypothetical protein [Ricinus communis]
9 Hb_094121_010 0.1329127648 - - -
10 Hb_003760_030 0.1356544162 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
11 Hb_001619_050 0.1359453218 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
12 Hb_000445_140 0.1360628029 - - hypothetical protein RCOM_0561550 [Ricinus communis]
13 Hb_003531_080 0.1371089303 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
14 Hb_000012_270 0.1376428519 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
15 Hb_171554_010 0.1381456581 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
16 Hb_000494_080 0.1381915131 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
17 Hb_026234_010 0.138671238 - - choline monooxygenase, putative [Ricinus communis]
18 Hb_002498_140 0.1389730039 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
19 Hb_000684_080 0.1390246182 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
20 Hb_001124_010 0.1394884711 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003688_040 Hb_003688_040 Hb_004097_130 Hb_004097_130 Hb_003688_040--Hb_004097_130 Hb_002485_030 Hb_002485_030 Hb_003688_040--Hb_002485_030 Hb_000108_050 Hb_000108_050 Hb_003688_040--Hb_000108_050 Hb_024836_010 Hb_024836_010 Hb_003688_040--Hb_024836_010 Hb_000022_190 Hb_000022_190 Hb_003688_040--Hb_000022_190 Hb_000635_090 Hb_000635_090 Hb_003688_040--Hb_000635_090 Hb_001472_060 Hb_001472_060 Hb_004097_130--Hb_001472_060 Hb_003531_080 Hb_003531_080 Hb_004097_130--Hb_003531_080 Hb_154471_020 Hb_154471_020 Hb_004097_130--Hb_154471_020 Hb_000103_480 Hb_000103_480 Hb_004097_130--Hb_000103_480 Hb_004097_130--Hb_000635_090 Hb_001085_260 Hb_001085_260 Hb_002485_030--Hb_001085_260 Hb_003760_030 Hb_003760_030 Hb_002485_030--Hb_003760_030 Hb_003119_090 Hb_003119_090 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_000445_140 Hb_000445_140 Hb_000108_050--Hb_000445_140 Hb_002150_140 Hb_002150_140 Hb_000108_050--Hb_002150_140 Hb_156850_100 Hb_156850_100 Hb_000108_050--Hb_156850_100 Hb_001828_040 Hb_001828_040 Hb_000108_050--Hb_001828_040 Hb_001014_100 Hb_001014_100 Hb_000108_050--Hb_001014_100 Hb_000244_180 Hb_000244_180 Hb_000108_050--Hb_000244_180 Hb_024836_010--Hb_002485_030 Hb_000300_690 Hb_000300_690 Hb_024836_010--Hb_000300_690 Hb_006405_050 Hb_006405_050 Hb_024836_010--Hb_006405_050 Hb_001817_150 Hb_001817_150 Hb_024836_010--Hb_001817_150 Hb_024836_010--Hb_001085_260 Hb_000069_570 Hb_000069_570 Hb_000022_190--Hb_000069_570 Hb_089246_010 Hb_089246_010 Hb_000022_190--Hb_089246_010 Hb_001018_090 Hb_001018_090 Hb_000022_190--Hb_001018_090 Hb_008014_040 Hb_008014_040 Hb_000022_190--Hb_008014_040 Hb_000103_340 Hb_000103_340 Hb_000022_190--Hb_000103_340 Hb_000022_190--Hb_000635_090 Hb_001518_080 Hb_001518_080 Hb_000635_090--Hb_001518_080 Hb_002027_080 Hb_002027_080 Hb_000635_090--Hb_002027_080 Hb_000635_090--Hb_000103_340 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000270_190 Hb_000270_190 Hb_000635_090--Hb_000270_190 Hb_000773_040 Hb_000773_040 Hb_000635_090--Hb_000773_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69887 1.68193 4.7421 3.18595 1.13418 3.20949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.850757 1.33783 2.31107 1.08443 2.56387

CAGE analysis