Hb_000300_690

Information

Type -
Description -
Location Contig300: 607469-607711
Sequence    

Annotation

kegg
ID rcu:RCOM_1121510
description hypothetical protein
nr
ID KDP39699.1
description hypothetical protein JCGZ_02719 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02719 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31645: 608197-608684
cDNA
(Sanger)
(ID:Location)		 047_P20.ab1: 607328-607621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_690 0.0 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
2 Hb_000056_040 0.1013643983 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
3 Hb_000690_160 0.1165077075 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
4 Hb_000599_180 0.1232841527 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000046_040 0.1266637976 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004884_070 0.1316899307 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
7 Hb_024836_010 0.1323632685 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
8 Hb_001817_150 0.1334620094 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_001001_080 0.135987122 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
10 Hb_075751_010 0.1390810846 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
11 Hb_005463_130 0.1393966862 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
12 Hb_000808_050 0.1399816786 - - exonuclease, putative [Ricinus communis]
13 Hb_121937_010 0.1407126874 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
14 Hb_016467_010 0.1426520135 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
15 Hb_001501_080 0.1436104301 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
16 Hb_001975_090 0.1453416488 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
17 Hb_000136_110 0.1474001667 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
18 Hb_006817_010 0.1475449195 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
19 Hb_000866_010 0.1475638411 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012725_070 0.1476130065 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_690 Hb_000300_690 Hb_000056_040 Hb_000056_040 Hb_000300_690--Hb_000056_040 Hb_000690_160 Hb_000690_160 Hb_000300_690--Hb_000690_160 Hb_000599_180 Hb_000599_180 Hb_000300_690--Hb_000599_180 Hb_000046_040 Hb_000046_040 Hb_000300_690--Hb_000046_040 Hb_004884_070 Hb_004884_070 Hb_000300_690--Hb_004884_070 Hb_024836_010 Hb_024836_010 Hb_000300_690--Hb_024836_010 Hb_004369_020 Hb_004369_020 Hb_000056_040--Hb_004369_020 Hb_000056_040--Hb_004884_070 Hb_001450_050 Hb_001450_050 Hb_000056_040--Hb_001450_050 Hb_000056_040--Hb_000599_180 Hb_001638_290 Hb_001638_290 Hb_000056_040--Hb_001638_290 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000808_050 Hb_000808_050 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_011618_050 Hb_011618_050 Hb_000046_040--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_000046_040--Hb_000649_230 Hb_010931_070 Hb_010931_070 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000046_040--Hb_000690_160 Hb_004884_070--Hb_000690_160 Hb_002374_240 Hb_002374_240 Hb_004884_070--Hb_002374_240 Hb_001322_140 Hb_001322_140 Hb_004884_070--Hb_001322_140 Hb_004884_070--Hb_001001_080 Hb_004884_070--Hb_000753_240 Hb_004884_070--Hb_000866_010 Hb_002485_030 Hb_002485_030 Hb_024836_010--Hb_002485_030 Hb_003688_040 Hb_003688_040 Hb_024836_010--Hb_003688_040 Hb_006405_050 Hb_006405_050 Hb_024836_010--Hb_006405_050 Hb_001817_150 Hb_001817_150 Hb_024836_010--Hb_001817_150 Hb_001085_260 Hb_001085_260 Hb_024836_010--Hb_001085_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8458 10.6923 36.3425 32.6111 28.3963 22.3951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0439 20.1902 30.6212 4.61625 23.9655

CAGE analysis