Hb_000690_160

Information

Type -
Description -
Location Contig690: 236098-245264
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01740g
description hypothetical protein
nr
ID XP_011018460.1
description PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9MU90
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01740g PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent rna helicase dbp73d isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54315: 236283-245145
cDNA
(Sanger)
(ID:Location)		 022_H19r.ab1: 244488-245173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000690_160 0.0 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
2 Hb_000866_010 0.0738658799 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000753_240 0.0825501302 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
4 Hb_075751_010 0.0839536198 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
5 Hb_006817_010 0.0885612335 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
6 Hb_004440_020 0.0889327963 - - AP-3 complex subunit sigma-1, putative [Ricinus communis]
7 Hb_000768_170 0.0891929997 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
8 Hb_171376_010 0.0905492804 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
9 Hb_000046_040 0.0923386045 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000869_020 0.0924412472 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
11 Hb_002235_250 0.0929639542 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
12 Hb_121937_010 0.093328536 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
13 Hb_004884_070 0.0944234452 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
14 Hb_012725_070 0.096074931 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
15 Hb_000053_110 0.0974318366 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004970_190 0.0974598137 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_007389_010 0.099269398 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
18 Hb_003029_070 0.1018405728 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_001001_080 0.1033081628 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
20 Hb_002876_220 0.1051522812 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_000690_160 Hb_000690_160 Hb_000866_010 Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000753_240 Hb_000753_240 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_003029_070 Hb_003029_070 Hb_000753_240--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000753_240--Hb_004970_190 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000804_040 Hb_000804_040 Hb_000753_240--Hb_000804_040 Hb_000603_230 Hb_000603_230 Hb_075751_010--Hb_000603_230 Hb_001975_090 Hb_001975_090 Hb_075751_010--Hb_001975_090 Hb_000869_020 Hb_000869_020 Hb_075751_010--Hb_000869_020 Hb_075751_010--Hb_000866_010 Hb_075751_010--Hb_000866_260 Hb_012725_070 Hb_012725_070 Hb_006817_010--Hb_012725_070 Hb_000808_050 Hb_000808_050 Hb_006817_010--Hb_000808_050 Hb_000390_170 Hb_000390_170 Hb_006817_010--Hb_000390_170 Hb_006817_010--Hb_000053_110 Hb_107879_010 Hb_107879_010 Hb_004440_020--Hb_107879_010 Hb_001195_460 Hb_001195_460 Hb_004440_020--Hb_001195_460 Hb_002876_220 Hb_002876_220 Hb_004440_020--Hb_002876_220 Hb_003077_020 Hb_003077_020 Hb_004440_020--Hb_003077_020 Hb_012022_150 Hb_012022_150 Hb_004440_020--Hb_012022_150 Hb_003020_020 Hb_003020_020 Hb_000768_170--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_000768_170--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_000768_170--Hb_005054_060 Hb_000347_540 Hb_000347_540 Hb_000768_170--Hb_000347_540 Hb_001481_170 Hb_001481_170 Hb_000768_170--Hb_001481_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0493 9.25223 27.8881 17.229 17.4618 16.6408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2242 22.5994 20.2993 5.17225 20.464

CAGE analysis