Hb_000603_230

Information

Type -
Description -
Location Contig603: 254370-274521
Sequence    

Annotation

kegg
ID rcu:RCOM_0707470
description copper-transporting atpase paa1, putative (EC:3.6.3.4)
nr
ID XP_002516143.1
description copper-transporting atpase paa1, putative [Ricinus communis]
swissprot
ID B9DFX7
description Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 PE=2 SV=1
trembl
ID B9RQX4
description Copper-transporting atpase paa1, putative OS=Ricinus communis GN=RCOM_0707470 PE=3 SV=1
Gene Ontology
ID GO:0009507
description copper-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50662: 263336-264382 , PASA_asmbl_50663: 254490-264247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_230 0.0 - - copper-transporting atpase paa1, putative [Ricinus communis]
2 Hb_175557_010 0.0814442089 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
3 Hb_075751_010 0.0924403493 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
4 Hb_002600_090 0.0940221439 - - ATP binding protein, putative [Ricinus communis]
5 Hb_002871_190 0.1031731714 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
6 Hb_003082_030 0.1032036368 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
7 Hb_010931_130 0.1044849168 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
8 Hb_007002_020 0.1090987292 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_001766_050 0.1101259065 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
10 Hb_010883_040 0.1108989986 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
11 Hb_002284_310 0.1109205603 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
12 Hb_000335_030 0.1115763576 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
13 Hb_002799_110 0.1116238906 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
14 Hb_001629_080 0.1131544576 - - hypothetical protein POPTR_0011s12610g [Populus trichocarpa]
15 Hb_171376_010 0.1131595077 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
16 Hb_018133_090 0.1149419329 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011716_130 0.1150001203 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
18 Hb_000869_020 0.1154548084 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
19 Hb_012114_070 0.1156655881 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
20 Hb_000614_220 0.1164774114 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]

Gene co-expression network

sample Hb_000603_230 Hb_000603_230 Hb_175557_010 Hb_175557_010 Hb_000603_230--Hb_175557_010 Hb_075751_010 Hb_075751_010 Hb_000603_230--Hb_075751_010 Hb_002600_090 Hb_002600_090 Hb_000603_230--Hb_002600_090 Hb_002871_190 Hb_002871_190 Hb_000603_230--Hb_002871_190 Hb_003082_030 Hb_003082_030 Hb_000603_230--Hb_003082_030 Hb_010931_130 Hb_010931_130 Hb_000603_230--Hb_010931_130 Hb_175557_010--Hb_010931_130 Hb_175557_010--Hb_002600_090 Hb_000288_030 Hb_000288_030 Hb_175557_010--Hb_000288_030 Hb_000260_030 Hb_000260_030 Hb_175557_010--Hb_000260_030 Hb_001514_120 Hb_001514_120 Hb_175557_010--Hb_001514_120 Hb_000690_160 Hb_000690_160 Hb_075751_010--Hb_000690_160 Hb_001975_090 Hb_001975_090 Hb_075751_010--Hb_001975_090 Hb_000869_020 Hb_000869_020 Hb_075751_010--Hb_000869_020 Hb_000866_010 Hb_000866_010 Hb_075751_010--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_075751_010--Hb_000866_260 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_002600_090--Hb_000599_250 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_001629_080 Hb_001629_080 Hb_003082_030--Hb_001629_080 Hb_133702_010 Hb_133702_010 Hb_003082_030--Hb_133702_010 Hb_001766_050 Hb_001766_050 Hb_003082_030--Hb_001766_050 Hb_023371_020 Hb_023371_020 Hb_003082_030--Hb_023371_020 Hb_006132_090 Hb_006132_090 Hb_003082_030--Hb_006132_090 Hb_000665_140 Hb_000665_140 Hb_003082_030--Hb_000665_140 Hb_000375_350 Hb_000375_350 Hb_010931_130--Hb_000375_350 Hb_000925_130 Hb_000925_130 Hb_010931_130--Hb_000925_130 Hb_003052_050 Hb_003052_050 Hb_010931_130--Hb_003052_050 Hb_004754_050 Hb_004754_050 Hb_010931_130--Hb_004754_050 Hb_010931_130--Hb_023371_020 Hb_010931_130--Hb_000599_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1019 8.27798 20.6063 16.7667 9.94204 9.85448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5089 21.7922 23.8986 9.59518 29.845

CAGE analysis