Hb_175557_010

Information

Type -
Description -
Location Contig175557: 86-1609
Sequence    

Annotation

kegg
ID rcu:RCOM_0686430
description glutamate-1-semialdehyde 2,1-aminomutase, putative (EC:5.4.3.8)
nr
ID XP_002526835.1
description glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
swissprot
ID Q42522
description Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2
trembl
ID B9SLG6
description Glutamate-1-semialdehyde 2,1-aminomutase, putative OS=Ricinus communis GN=RCOM_0686430 PE=3 SV=1
Gene Ontology
ID GO:0008483
description glutamate-1-semialdehyde -aminomutase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16824: 1350-1554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175557_010 0.0 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
2 Hb_000603_230 0.0814442089 - - copper-transporting atpase paa1, putative [Ricinus communis]
3 Hb_010931_130 0.0895690848 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
4 Hb_002600_090 0.1005239767 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000288_030 0.1023706045 - - PREDICTED: syntaxin-32 [Jatropha curcas]
6 Hb_000260_030 0.1024602992 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_001514_120 0.1025641385 - - hypothetical protein VITISV_015004 [Vitis vinifera]
8 Hb_075751_010 0.1044044302 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
9 Hb_050514_010 0.1097275964 - - hypothetical protein 29 [Hevea brasiliensis]
10 Hb_001544_030 0.1103499707 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
11 Hb_004109_220 0.1113823352 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
12 Hb_000925_130 0.1123183683 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
13 Hb_001541_120 0.1141130767 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
14 Hb_002799_110 0.1143065994 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
15 Hb_000853_190 0.1146641771 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_010883_050 0.1152171972 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
17 Hb_000436_130 0.1154943389 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
18 Hb_000928_070 0.1155439901 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_003728_060 0.1155726195 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
20 Hb_000614_160 0.1155982578 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_175557_010 Hb_175557_010 Hb_000603_230 Hb_000603_230 Hb_175557_010--Hb_000603_230 Hb_010931_130 Hb_010931_130 Hb_175557_010--Hb_010931_130 Hb_002600_090 Hb_002600_090 Hb_175557_010--Hb_002600_090 Hb_000288_030 Hb_000288_030 Hb_175557_010--Hb_000288_030 Hb_000260_030 Hb_000260_030 Hb_175557_010--Hb_000260_030 Hb_001514_120 Hb_001514_120 Hb_175557_010--Hb_001514_120 Hb_075751_010 Hb_075751_010 Hb_000603_230--Hb_075751_010 Hb_000603_230--Hb_002600_090 Hb_002871_190 Hb_002871_190 Hb_000603_230--Hb_002871_190 Hb_003082_030 Hb_003082_030 Hb_000603_230--Hb_003082_030 Hb_000603_230--Hb_010931_130 Hb_000375_350 Hb_000375_350 Hb_010931_130--Hb_000375_350 Hb_000925_130 Hb_000925_130 Hb_010931_130--Hb_000925_130 Hb_003052_050 Hb_003052_050 Hb_010931_130--Hb_003052_050 Hb_004754_050 Hb_004754_050 Hb_010931_130--Hb_004754_050 Hb_023371_020 Hb_023371_020 Hb_010931_130--Hb_023371_020 Hb_000599_250 Hb_000599_250 Hb_010931_130--Hb_000599_250 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_002600_090--Hb_000599_250 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_000928_070 Hb_000928_070 Hb_000288_030--Hb_000928_070 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000288_030--Hb_000925_130 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000288_030--Hb_012022_040 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_001514_120--Hb_000288_030 Hb_001514_120--Hb_000928_070 Hb_005162_060 Hb_005162_060 Hb_001514_120--Hb_005162_060 Hb_000856_010 Hb_000856_010 Hb_001514_120--Hb_000856_010 Hb_001514_120--Hb_012022_040 Hb_001541_120 Hb_001541_120 Hb_001514_120--Hb_001541_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75477 1.42212 2.91832 3.34701 1.98906 1.14183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03889 4.03345 4.897 1.95006 3.91073

CAGE analysis