Hb_003052_050

Information

Type -
Description -
Location Contig3052: 42145-47866
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11300g
description POPTRDRAFT_1084995; hypothetical protein
nr
ID XP_012080498.1
description PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
swissprot
ID Q8W4Y5
description ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1
trembl
ID A0A067K8T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11809 PE=4 SV=1
Gene Ontology
ID GO:0005789
description asc1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32178: 42220-47811 , PASA_asmbl_32179: 43622-43838 , PASA_asmbl_32180: 44601-44880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_050 0.0 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
2 Hb_010931_130 0.0796690499 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
3 Hb_001514_120 0.0971467228 - - hypothetical protein VITISV_015004 [Vitis vinifera]
4 Hb_005167_010 0.1050734033 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
5 Hb_012799_170 0.1065053904 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
6 Hb_001541_120 0.106878835 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
7 Hb_007975_060 0.1069794435 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
8 Hb_006469_080 0.1070385019 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008246_060 0.1088466561 - - hypothetical protein F383_01577 [Gossypium arboreum]
10 Hb_005144_050 0.1088583885 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
11 Hb_008566_030 0.1095625696 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_000928_070 0.1096993541 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
13 Hb_000329_210 0.1103752924 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_006846_150 0.1107274616 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000566_120 0.1109310565 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
16 Hb_002408_020 0.111631717 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
17 Hb_000347_240 0.1120333714 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
18 Hb_005016_040 0.1128454994 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
19 Hb_001366_180 0.1138549893 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_008421_020 0.1140608529 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003052_050 Hb_003052_050 Hb_010931_130 Hb_010931_130 Hb_003052_050--Hb_010931_130 Hb_001514_120 Hb_001514_120 Hb_003052_050--Hb_001514_120 Hb_005167_010 Hb_005167_010 Hb_003052_050--Hb_005167_010 Hb_012799_170 Hb_012799_170 Hb_003052_050--Hb_012799_170 Hb_001541_120 Hb_001541_120 Hb_003052_050--Hb_001541_120 Hb_007975_060 Hb_007975_060 Hb_003052_050--Hb_007975_060 Hb_000375_350 Hb_000375_350 Hb_010931_130--Hb_000375_350 Hb_000925_130 Hb_000925_130 Hb_010931_130--Hb_000925_130 Hb_004754_050 Hb_004754_050 Hb_010931_130--Hb_004754_050 Hb_023371_020 Hb_023371_020 Hb_010931_130--Hb_023371_020 Hb_000599_250 Hb_000599_250 Hb_010931_130--Hb_000599_250 Hb_000288_030 Hb_000288_030 Hb_001514_120--Hb_000288_030 Hb_000928_070 Hb_000928_070 Hb_001514_120--Hb_000928_070 Hb_005162_060 Hb_005162_060 Hb_001514_120--Hb_005162_060 Hb_000856_010 Hb_000856_010 Hb_001514_120--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_001514_120--Hb_012022_040 Hb_001514_120--Hb_001541_120 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_005167_010--Hb_007975_060 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_008421_020 Hb_008421_020 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_002157_120 Hb_002157_120 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_133702_010 Hb_133702_010 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24559 5.09931 9.16573 14.3803 9.01813 5.75621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3745 14.989 13.6564 4.359 15.6731

CAGE analysis