Hb_000288_030

Information

Type -
Description -
Location Contig288: 26028-30720
Sequence    

Annotation

kegg
ID rcu:RCOM_0925890
description syntaxin, putative
nr
ID XP_012078675.1
description PREDICTED: syntaxin-32 [Jatropha curcas]
swissprot
ID Q9LK09
description Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1
trembl
ID A0A067K8A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13247 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin-32-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30072: 26259-30659 , PASA_asmbl_30073: 26777-27141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000288_030 0.0 - - PREDICTED: syntaxin-32 [Jatropha curcas]
2 Hb_000928_070 0.0517894617 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
3 Hb_004109_220 0.0575326703 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
4 Hb_000003_230 0.0653830256 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
5 Hb_000925_130 0.0656922124 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
6 Hb_003582_060 0.0687430983 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_012022_040 0.0700968095 - - Protein SIS1, putative [Ricinus communis]
8 Hb_001514_120 0.0705443403 - - hypothetical protein VITISV_015004 [Vitis vinifera]
9 Hb_000340_180 0.0713344455 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
10 Hb_004078_040 0.0732595302 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
11 Hb_005496_140 0.0737066803 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009339_030 0.0760606524 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
13 Hb_001300_150 0.0766574693 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
14 Hb_003304_020 0.0772359573 - - Polyadenylate-binding protein RBP47C [Glycine soja]
15 Hb_000260_030 0.0773533195 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_003025_100 0.0777281921 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_024439_010 0.0777317 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
18 Hb_000375_350 0.077832442 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
19 Hb_001489_080 0.0780544189 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_005054_110 0.0795950396 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000288_030 Hb_000288_030 Hb_000928_070 Hb_000928_070 Hb_000288_030--Hb_000928_070 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000925_130 Hb_000925_130 Hb_000288_030--Hb_000925_130 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000288_030--Hb_012022_040 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_000928_070--Hb_012022_040 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_149985_010 Hb_149985_010 Hb_004109_220--Hb_149985_010 Hb_004109_220--Hb_012022_040 Hb_000359_060 Hb_000359_060 Hb_004109_220--Hb_000359_060 Hb_004109_220--Hb_000928_070 Hb_001511_060 Hb_001511_060 Hb_004109_220--Hb_001511_060 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350 Hb_003582_060--Hb_006615_240 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_012022_040--Hb_149985_010 Hb_012022_040--Hb_000221_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4098 6.0961 8.72724 10.9756 6.8394 6.64832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47498 14.0719 13.4782 7.47487 10.6087

CAGE analysis