Hb_000345_310

Information

Type -
Description -
Location Contig345: 259750-266326
Sequence    

Annotation

kegg
ID rcu:RCOM_1432000
description AMP-activated protein kinase, gamma regulatory subunit, putative
nr
ID XP_012089046.1
description PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
swissprot
ID Q944A6
description Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1
trembl
ID A0A067JVD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23337 PE=4 SV=1
Gene Ontology
ID GO:0016301
description sucrose nonfermenting 4-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36005: 259897-266301 , PASA_asmbl_36006: 260823-261042
cDNA
(Sanger)
(ID:Location)		 001_J11.ab1: 259897-260812 , 021_C16.ab1: 259900-260486 , 026_J05.ab1: 259897-260582 , 051_M07.ab1: 259897-260791 , 052_F10.ab1: 259897-260615

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_310 0.0 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
2 Hb_000375_350 0.0652840828 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
3 Hb_013575_010 0.0662352689 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
4 Hb_000260_350 0.0685960075 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000599_250 0.0716446543 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_000925_130 0.073929909 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
7 Hb_001300_150 0.0743665732 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
8 Hb_003025_100 0.0753864044 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
9 Hb_000349_260 0.0760762029 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
10 Hb_002641_060 0.0779784235 - - prefoldin subunit, putative [Ricinus communis]
11 Hb_006469_080 0.0786338254 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000340_180 0.0791543613 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
13 Hb_000928_070 0.0799464247 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_000200_020 0.0812670311 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
15 Hb_004078_040 0.0830624008 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
16 Hb_004934_100 0.0834529551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000288_030 0.0839371585 - - PREDICTED: syntaxin-32 [Jatropha curcas]
18 Hb_000666_100 0.0841376189 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
19 Hb_017895_040 0.08438814 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
20 Hb_006478_020 0.0847421373 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_310 Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000345_310--Hb_000375_350 Hb_013575_010 Hb_013575_010 Hb_000345_310--Hb_013575_010 Hb_000260_350 Hb_000260_350 Hb_000345_310--Hb_000260_350 Hb_000599_250 Hb_000599_250 Hb_000345_310--Hb_000599_250 Hb_000925_130 Hb_000925_130 Hb_000345_310--Hb_000925_130 Hb_001300_150 Hb_001300_150 Hb_000345_310--Hb_001300_150 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_000375_350--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_013575_010--Hb_002641_060 Hb_013575_010--Hb_000260_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000599_250--Hb_001300_150 Hb_000599_250--Hb_005496_140 Hb_000599_250--Hb_002641_060 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000928_070 Hb_000928_070 Hb_000925_130--Hb_000928_070 Hb_000925_130--Hb_000349_260 Hb_000925_130--Hb_000375_350 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.85868 9.28692 13.5777 18.6412 9.9668 13.768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4937 15.5293 18.8607 8.57926 13.3007

CAGE analysis