Hb_000023_260

Information

Type -
Description -
Location Contig23: 487919-492645
Sequence    

Annotation

kegg
ID rcu:RCOM_0920510
description 1,2-diacylglycerol 3-beta-galactosyltransferase, putative
nr
ID XP_012076397.1
description PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SM44
description Monogalactosyldiacylglycerol synthase, chloroplastic OS=Spinacia oleracea GN=MGD A PE=1 SV=1
trembl
ID A0A067KNV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07065 PE=4 SV=1
Gene Ontology
ID GO:0016758
description monogalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23957: 488142-488340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_260 0.0 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
2 Hb_000375_390 0.0566327702 - - poly-A binding protein, putative [Ricinus communis]
3 Hb_000061_180 0.0611510774 - - exonuclease, putative [Ricinus communis]
4 Hb_000212_230 0.0719112218 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
5 Hb_001314_080 0.0750825702 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
6 Hb_133702_010 0.0761592147 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_007975_060 0.0762202282 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
8 Hb_000230_400 0.0784851513 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000035_090 0.0807484038 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
10 Hb_008421_020 0.080760451 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
11 Hb_157023_020 0.0829135523 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_005800_030 0.0840211276 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_021374_030 0.0852100933 - - hypothetical protein RCOM_0351490 [Ricinus communis]
14 Hb_003878_090 0.0860645056 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
15 Hb_004452_120 0.0865243717 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
16 Hb_015675_040 0.087131844 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
17 Hb_003153_010 0.087367717 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
18 Hb_001957_020 0.088867836 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
19 Hb_000976_120 0.0897807024 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
20 Hb_004531_140 0.0901014137 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_260 Hb_000023_260 Hb_000375_390 Hb_000375_390 Hb_000023_260--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_000023_260--Hb_000061_180 Hb_000212_230 Hb_000212_230 Hb_000023_260--Hb_000212_230 Hb_001314_080 Hb_001314_080 Hb_000023_260--Hb_001314_080 Hb_133702_010 Hb_133702_010 Hb_000023_260--Hb_133702_010 Hb_007975_060 Hb_007975_060 Hb_000023_260--Hb_007975_060 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000061_180--Hb_007975_060 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120 Hb_003581_200 Hb_003581_200 Hb_000212_230--Hb_003581_200 Hb_000016_210 Hb_000016_210 Hb_000212_230--Hb_000016_210 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_010863_050 Hb_010863_050 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_010883_040 Hb_010883_040 Hb_001314_080--Hb_010883_040 Hb_015934_120 Hb_015934_120 Hb_001314_080--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_001314_080--Hb_001504_030 Hb_001314_080--Hb_000212_230 Hb_000665_130 Hb_000665_130 Hb_001314_080--Hb_000665_130 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91637 2.52749 3.82359 4.02312 2.36735 2.77661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35826 3.14501 2.34134 1.90766 5.28835

CAGE analysis