Hb_000035_090

Information

Type -
Description -
Location Contig35: 118732-122550
Sequence    

Annotation

kegg
ID rcu:RCOM_0921720
description Stromal cell-derived factor 2 precursor, putative (EC:2.4.1.109)
nr
ID XP_012076445.1
description PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
swissprot
ID Q93ZE8
description Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=SDF2 PE=1 SV=1
trembl
ID A0A067KBC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07097 PE=4 SV=1
Gene Ontology
ID GO:0005783
description stromal cell-derived factor 2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36397: 118782-122581 , PASA_asmbl_36398: 120177-120347
cDNA
(Sanger)
(ID:Location)		 002_E11.ab1: 119619-122578 , 031_I02.ab1: 120701-122581 , 041_N21.ab1: 119672-122288

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_090 0.0 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
2 Hb_073973_090 0.0579488889 - - Aminotransferase ybdL, putative [Ricinus communis]
3 Hb_000375_390 0.0645379907 - - poly-A binding protein, putative [Ricinus communis]
4 Hb_002876_300 0.067191656 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
5 Hb_002435_100 0.0707731548 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
6 Hb_003098_070 0.0714066474 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
7 Hb_000169_020 0.0719476721 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
8 Hb_021374_030 0.0723359884 - - hypothetical protein RCOM_0351490 [Ricinus communis]
9 Hb_000237_200 0.0731214717 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
10 Hb_000230_400 0.0734762756 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002631_240 0.0749901117 - - JHL17M24.3 [Jatropha curcas]
12 Hb_000061_180 0.0751081305 - - exonuclease, putative [Ricinus communis]
13 Hb_000111_170 0.077279102 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
14 Hb_000788_030 0.0778909643 - - PREDICTED: dynamin-2A [Jatropha curcas]
15 Hb_010863_050 0.0799085952 - - OTU domain-containing protein 6B, putative [Ricinus communis]
16 Hb_004324_360 0.0802433651 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
17 Hb_000103_340 0.0807088613 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
18 Hb_000023_260 0.0807484038 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
19 Hb_000363_310 0.0808745384 - - DNA topoisomerase type I, putative [Ricinus communis]
20 Hb_001703_040 0.0811892336 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_090 Hb_000035_090 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_007254_020 Hb_007254_020 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_002435_100--Hb_000230_460 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_000340_040 Hb_000340_040 Hb_000169_020--Hb_000340_040 Hb_000169_020--Hb_000139_080 Hb_006100_020 Hb_006100_020 Hb_000169_020--Hb_006100_020 Hb_006913_020 Hb_006913_020 Hb_000169_020--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000169_020--Hb_007413_010 Hb_004324_360 Hb_004324_360 Hb_000169_020--Hb_004324_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2757 39.6841 60.7552 41.6433 26.4742 27.6048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3225 35.8754 25.1069 26.649 60.297

CAGE analysis