Hb_000537_100

Information

Type -
Description -
Location Contig537: 173246-177189
Sequence    

Annotation

kegg
ID rcu:RCOM_0803000
description Coiled-coil domain-containing protein, putative
nr
ID XP_002516569.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID Q3SZX8
description Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1
trembl
ID B9RS50
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_0803000 PE=4 SV=1
Gene Ontology
ID GO:0005622
description coiled-coil domain-containing protein 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47601: 173149-177072 , PASA_asmbl_47602: 175488-175669 , PASA_asmbl_47603: 177120-177264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_100 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_029622_120 0.0586205951 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
3 Hb_005946_040 0.0642237135 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
4 Hb_073973_090 0.0688502064 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_002631_240 0.0721838551 - - JHL17M24.3 [Jatropha curcas]
6 Hb_002316_140 0.0724742811 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
7 Hb_001178_010 0.0758245837 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
8 Hb_001703_040 0.0788031264 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
9 Hb_014497_100 0.0795499947 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
10 Hb_007558_090 0.079812741 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000230_460 0.0826793239 - - Speckle-type POZ protein, putative [Ricinus communis]
12 Hb_000035_090 0.0828864144 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
13 Hb_002435_100 0.0833234636 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
14 Hb_001900_140 0.0841884552 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
15 Hb_002572_020 0.0892110627 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
16 Hb_049575_010 0.0902973159 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
17 Hb_000163_260 0.0906611293 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
18 Hb_002876_300 0.0924548426 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
19 Hb_010098_020 0.0925908273 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000176_020 0.0936794821 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]

Gene co-expression network

sample Hb_000537_100 Hb_000537_100 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_005946_040 Hb_005946_040 Hb_000537_100--Hb_005946_040 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_007558_090 Hb_007558_090 Hb_029622_120--Hb_007558_090 Hb_029622_120--Hb_005946_040 Hb_000723_030 Hb_000723_030 Hb_029622_120--Hb_000723_030 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_005946_040--Hb_002631_240 Hb_005946_040--Hb_007558_090 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_073973_090--Hb_002631_240 Hb_011671_260 Hb_011671_260 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_002631_240--Hb_011671_260 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_002572_020 Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_010098_020 Hb_010098_020 Hb_002316_140--Hb_010098_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_002316_140--Hb_001178_010 Hb_002316_140--Hb_073973_090 Hb_001178_010--Hb_014497_100 Hb_004129_090 Hb_004129_090 Hb_001178_010--Hb_004129_090 Hb_001178_010--Hb_001900_140 Hb_000926_200 Hb_000926_200 Hb_001178_010--Hb_000926_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1613 20.7313 46.471 25.2754 14.2302 9.74222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4845 27.0114 14.4464 14.4369 31.6676

CAGE analysis