Hb_010098_020

Information

Type -
Description -
Location Contig10098: 5944-8369
Sequence    

Annotation

kegg
ID rcu:RCOM_1517150
description transcription regulator, putative
nr
ID XP_012070286.1
description PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q9LF68
description Protein BOLA4, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=BOLA4 PE=1 SV=1
trembl
ID A0A067KTT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02597 PE=3 SV=1
Gene Ontology
ID GO:0009507
description protein chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00553: 5940-8496 , PASA_asmbl_00554: 7083-7607
cDNA
(Sanger)
(ID:Location)		 019_B22.ab1: 5940-8198 , 021_P16.ab1: 5940-8162 , 033_O09.ab1: 5940-8149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010098_020 0.0 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_002316_140 0.0706003225 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
3 Hb_000537_100 0.0925908273 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_002284_210 0.0938648551 - - PREDICTED: protein canopy-1 [Jatropha curcas]
5 Hb_146255_020 0.0963941606 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
6 Hb_006615_050 0.0966752328 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
7 Hb_002572_020 0.099166085 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
8 Hb_003760_030 0.0992959802 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
9 Hb_000003_170 0.0994640118 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
10 Hb_002092_120 0.0995430879 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
11 Hb_001178_010 0.1003484495 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
12 Hb_004312_010 0.1013923299 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
13 Hb_004129_090 0.1018609367 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
14 Hb_032202_100 0.1023401202 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_000300_260 0.1030011456 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
16 Hb_014497_100 0.1039844354 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_000173_310 0.10504952 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
18 Hb_004807_020 0.1060272193 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
19 Hb_003506_030 0.1063359334 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000163_260 0.106592311 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]

Gene co-expression network

sample Hb_010098_020 Hb_010098_020 Hb_002316_140 Hb_002316_140 Hb_010098_020--Hb_002316_140 Hb_000537_100 Hb_000537_100 Hb_010098_020--Hb_000537_100 Hb_002284_210 Hb_002284_210 Hb_010098_020--Hb_002284_210 Hb_146255_020 Hb_146255_020 Hb_010098_020--Hb_146255_020 Hb_006615_050 Hb_006615_050 Hb_010098_020--Hb_006615_050 Hb_002572_020 Hb_002572_020 Hb_010098_020--Hb_002572_020 Hb_002316_140--Hb_002572_020 Hb_014497_100 Hb_014497_100 Hb_002316_140--Hb_014497_100 Hb_002316_140--Hb_000537_100 Hb_001178_010 Hb_001178_010 Hb_002316_140--Hb_001178_010 Hb_073973_090 Hb_073973_090 Hb_002316_140--Hb_073973_090 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_005946_040 Hb_005946_040 Hb_000537_100--Hb_005946_040 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_000537_100--Hb_001178_010 Hb_006816_100 Hb_006816_100 Hb_002284_210--Hb_006816_100 Hb_003760_030 Hb_003760_030 Hb_002284_210--Hb_003760_030 Hb_002874_180 Hb_002874_180 Hb_002284_210--Hb_002874_180 Hb_143766_020 Hb_143766_020 Hb_002284_210--Hb_143766_020 Hb_002686_080 Hb_002686_080 Hb_002284_210--Hb_002686_080 Hb_006061_040 Hb_006061_040 Hb_146255_020--Hb_006061_040 Hb_004807_020 Hb_004807_020 Hb_146255_020--Hb_004807_020 Hb_002343_040 Hb_002343_040 Hb_146255_020--Hb_002343_040 Hb_001025_090 Hb_001025_090 Hb_146255_020--Hb_001025_090 Hb_001105_170 Hb_001105_170 Hb_146255_020--Hb_001105_170 Hb_001804_090 Hb_001804_090 Hb_146255_020--Hb_001804_090 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.0955 58.3631 156.035 94.4132 48.7969 41.9862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4028 88.5196 29.9075 29.3997 68.401

CAGE analysis