Hb_001077_070

Information

Type -
Description -
Location Contig1077: 83416-85152
Sequence    

Annotation

kegg
ID rcu:RCOM_1315040
description 60S ribosomal protein L9, putative
nr
ID XP_002518960.1
description 60S ribosomal protein L9, putative [Ricinus communis]
swissprot
ID P30707
description 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
trembl
ID B9RYZ1
description 60S ribosomal protein L9, putative OS=Ricinus communis GN=RCOM_1315040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02339: 83577-85103
cDNA
(Sanger)
(ID:Location)		 004_K13.ab1: 83651-85079 , 011_B19.ab1: 83607-85079 , 028_J03.ab1: 83715-85079 , 046_B01.ab1: 83684-85103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001077_070 0.0 - - 60S ribosomal protein L9, putative [Ricinus communis]
2 Hb_006615_050 0.0738378516 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
3 Hb_004807_020 0.0846208246 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
4 Hb_001950_070 0.0942888373 - - cyclin d, putative [Ricinus communis]
5 Hb_001025_090 0.0967346652 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
6 Hb_000866_310 0.0969035503 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
7 Hb_002909_040 0.0989288881 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
8 Hb_000019_190 0.1008051631 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
9 Hb_004096_160 0.1013207713 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
10 Hb_000207_200 0.1013672986 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
11 Hb_171900_090 0.1030345338 - - conserved hypothetical protein [Ricinus communis]
12 Hb_146255_020 0.1058440139 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
13 Hb_007007_040 0.1059084894 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
14 Hb_005649_100 0.1060352773 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_010775_030 0.1065366796 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
16 Hb_001005_020 0.1083259117 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
17 Hb_000789_320 0.1084592809 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
18 Hb_029695_080 0.1086509415 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
19 Hb_000236_490 0.1094093266 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
20 Hb_003119_090 0.1105921161 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_001077_070 Hb_001077_070 Hb_006615_050 Hb_006615_050 Hb_001077_070--Hb_006615_050 Hb_004807_020 Hb_004807_020 Hb_001077_070--Hb_004807_020 Hb_001950_070 Hb_001950_070 Hb_001077_070--Hb_001950_070 Hb_001025_090 Hb_001025_090 Hb_001077_070--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_001077_070--Hb_000866_310 Hb_002909_040 Hb_002909_040 Hb_001077_070--Hb_002909_040 Hb_006615_050--Hb_004807_020 Hb_004312_010 Hb_004312_010 Hb_006615_050--Hb_004312_010 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_004807_020--Hb_001025_090 Hb_001025_120 Hb_001025_120 Hb_004807_020--Hb_001025_120 Hb_004807_020--Hb_171900_090 Hb_146255_020 Hb_146255_020 Hb_004807_020--Hb_146255_020 Hb_018790_020 Hb_018790_020 Hb_004807_020--Hb_018790_020 Hb_001191_080 Hb_001191_080 Hb_001950_070--Hb_001191_080 Hb_004096_160 Hb_004096_160 Hb_001950_070--Hb_004096_160 Hb_004712_190 Hb_004712_190 Hb_001950_070--Hb_004712_190 Hb_003449_100 Hb_003449_100 Hb_001950_070--Hb_003449_100 Hb_100790_010 Hb_100790_010 Hb_001950_070--Hb_100790_010 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_001025_090--Hb_000176_020 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_007441_020 Hb_007441_020 Hb_000866_310--Hb_007441_020 Hb_000866_310--Hb_000789_320 Hb_004994_010 Hb_004994_010 Hb_000866_310--Hb_004994_010 Hb_000260_680 Hb_000260_680 Hb_000866_310--Hb_000260_680 Hb_000416_110 Hb_000416_110 Hb_000866_310--Hb_000416_110 Hb_002445_100 Hb_002445_100 Hb_000866_310--Hb_002445_100 Hb_002909_040--Hb_004096_160 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_000089_210 Hb_000089_210 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.5996 57.4078 147.546 69.1387 45.6279 52.0111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3882 76.9301 35.6904 61.8994 36.8708

CAGE analysis