Hb_004712_190

Information

Type -
Description -
Location Contig4712: 113050-116438
Sequence    

Annotation

kegg
ID rcu:RCOM_0522430
description hypothetical protein
nr
ID XP_012071032.1
description PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01050 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105633105

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44279: 112880-115789 , PASA_asmbl_44280: 114578-114775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_190 0.0 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
2 Hb_014231_020 0.070565573 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
3 Hb_001500_120 0.0727944555 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_005977_030 0.0793928591 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
5 Hb_005144_210 0.0835881048 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002686_080 0.0857887243 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
7 Hb_001191_080 0.0871199484 - - protein with unknown function [Ricinus communis]
8 Hb_003687_120 0.0882183361 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
9 Hb_000089_210 0.0915226486 - - unknown [Medicago truncatula]
10 Hb_000086_270 0.0931857601 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_003449_100 0.0934329661 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
12 Hb_016448_010 0.0935449842 - - Protein MYG1, putative [Ricinus communis]
13 Hb_003470_040 0.0936391052 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
14 Hb_001863_160 0.0941760007 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
15 Hb_003506_030 0.0957462821 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000120_890 0.0974103336 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
17 Hb_000703_160 0.0974499434 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
18 Hb_021576_150 0.0989170326 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
19 Hb_001053_190 0.1002526465 - - ADP,ATP carrier protein, putative [Ricinus communis]
20 Hb_000163_260 0.1008784953 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_190 Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_005977_030--Hb_011671_310 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5847 17.2429 42.9808 21.8244 7.32423 7.8554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.77516 11.9517 8.17352 13.2272 13.0553

CAGE analysis