Hb_001307_190

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1307: 159680-164482
Sequence    

Annotation

kegg
ID rcu:RCOM_0542940
description transcription factor, putative
nr
ID XP_002526559.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9SKP0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0542940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phr1-like 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09106: 159648-162286 , PASA_asmbl_09109: 163011-170355 , PASA_asmbl_09110: 164419-164659
cDNA
(Sanger)
(ID:Location)		 011_J13.ab1: 163685-170354

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_190 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_014231_020 0.0966458796 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
3 Hb_000703_160 0.109354106 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
4 Hb_000958_080 0.1102645604 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000617_310 0.1107230975 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
6 Hb_005144_210 0.1149919396 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009449_060 0.1162571159 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
8 Hb_001322_020 0.1164930557 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
9 Hb_156635_020 0.11670254 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
10 Hb_164945_010 0.1167829602 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
11 Hb_007163_060 0.1174045451 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
12 Hb_000363_350 0.1183501665 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
13 Hb_000009_220 0.1220373156 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
14 Hb_004096_160 0.1223364122 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
15 Hb_002311_380 0.1226639616 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
16 Hb_171718_020 0.1233184564 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
17 Hb_172257_010 0.1236534989 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
18 Hb_006816_100 0.1282909415 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
19 Hb_000048_080 0.1308090563 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
20 Hb_002615_070 0.131606769 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_190 Hb_001307_190 Hb_014231_020 Hb_014231_020 Hb_001307_190--Hb_014231_020 Hb_000703_160 Hb_000703_160 Hb_001307_190--Hb_000703_160 Hb_000958_080 Hb_000958_080 Hb_001307_190--Hb_000958_080 Hb_000617_310 Hb_000617_310 Hb_001307_190--Hb_000617_310 Hb_005144_210 Hb_005144_210 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060 Hb_004712_190 Hb_004712_190 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_014231_020--Hb_000703_160 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_003449_100 Hb_003449_100 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_007919_110 Hb_007919_110 Hb_000703_160--Hb_007919_110 Hb_000703_160--Hb_005144_210 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000703_160--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_001863_140 Hb_001863_140 Hb_000617_310--Hb_001863_140 Hb_039021_010 Hb_039021_010 Hb_000617_310--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_000617_310--Hb_004096_160 Hb_000617_310--Hb_002909_040 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_009449_060--Hb_004096_160 Hb_009449_060--Hb_002909_040 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91124 5.83992 9.99068 6.62463 3.84269 1.83193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51423 2.24521 1.41334 2.36892 1.74946

CAGE analysis