Hb_039021_010

Information

Type transcription factor
Description TF Family: B3
Location Contig39021: 161-403
Sequence    

Annotation

kegg
ID rcu:RCOM_0465210
description hypothetical protein
nr
ID XP_002528454.1
description hypothetical protein RCOM_0465210 [Ricinus communis]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID B9SR35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0465210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039021_010 0.0 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
2 Hb_000580_100 0.0972571065 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
3 Hb_005144_210 0.1095580519 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000836_300 0.1122630237 - - caax prenyl protease ste24, putative [Ricinus communis]
5 Hb_004079_130 0.1159352068 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
6 Hb_003050_260 0.115983008 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
7 Hb_000617_310 0.1173227185 - - PREDICTED: cell cycle checkpoint control protein RAD9A [Jatropha curcas]
8 Hb_164945_010 0.1197581843 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
9 Hb_003540_050 0.120307563 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
10 Hb_001825_040 0.1232969478 - - myosin XI, putative [Ricinus communis]
11 Hb_005730_010 0.1238411312 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
12 Hb_001482_050 0.1244491523 - - COR413-PM2, putative [Ricinus communis]
13 Hb_001584_260 0.1255299441 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000622_200 0.1286332378 - - aldose 1-epimerase, putative [Ricinus communis]
15 Hb_124373_010 0.1291087158 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
16 Hb_000958_080 0.1296606399 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002740_090 0.129742686 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
18 Hb_004096_160 0.1304571726 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
19 Hb_010381_010 0.1310772447 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_030982_030 0.1322992088 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_039021_010 Hb_039021_010 Hb_000580_100 Hb_000580_100 Hb_039021_010--Hb_000580_100 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_004079_130 Hb_004079_130 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000622_200 Hb_000622_200 Hb_000580_100--Hb_000622_200 Hb_000913_040 Hb_000913_040 Hb_000580_100--Hb_000913_040 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_000580_100--Hb_004079_130 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_004064_040 Hb_004064_040 Hb_000836_300--Hb_004064_040 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_164945_010 Hb_164945_010 Hb_000836_300--Hb_164945_010 Hb_005064_010 Hb_005064_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_004228_120 Hb_004228_120 Hb_000836_300--Hb_004228_120 Hb_000120_810 Hb_000120_810 Hb_004079_130--Hb_000120_810 Hb_000227_390 Hb_000227_390 Hb_004079_130--Hb_000227_390 Hb_026198_010 Hb_026198_010 Hb_004079_130--Hb_026198_010 Hb_001482_050 Hb_001482_050 Hb_004079_130--Hb_001482_050 Hb_000704_030 Hb_000704_030 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050 Hb_010812_070 Hb_010812_070 Hb_003050_260--Hb_010812_070 Hb_003050_260--Hb_005144_210 Hb_001268_340 Hb_001268_340 Hb_003050_260--Hb_001268_340 Hb_002837_050 Hb_002837_050 Hb_003050_260--Hb_002837_050 Hb_005754_040 Hb_005754_040 Hb_003050_260--Hb_005754_040 Hb_001307_190 Hb_001307_190 Hb_000617_310--Hb_001307_190 Hb_001863_140 Hb_001863_140 Hb_000617_310--Hb_001863_140 Hb_000345_510 Hb_000345_510 Hb_000617_310--Hb_000345_510 Hb_004096_160 Hb_004096_160 Hb_000617_310--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_000617_310--Hb_002909_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7182 13.5541 35.9296 34.308 15.4007 7.12588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7304 13.642 4.7633 20.7731 7.26226

CAGE analysis