Hb_005144_210

Information

Type -
Description -
Location Contig5144: 164963-168615
Sequence    

Annotation

kegg
ID rcu:RCOM_0474730
description hypothetical protein
nr
ID XP_002523717.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LX14
description Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1
trembl
ID B9SCJ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0474730 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein upstream of flc-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46460: 164991-165672 , PASA_asmbl_46461: 167196-168605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004712_190 0.0835881048 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
3 Hb_004108_210 0.0855003859 - - phenazine biosynthesis protein, putative [Ricinus communis]
4 Hb_000703_160 0.0869585578 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
5 Hb_001369_470 0.0884725534 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
6 Hb_014231_020 0.0922312364 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
7 Hb_000098_150 0.092358907 - - DNA helicase hus2, putative [Ricinus communis]
8 Hb_001863_160 0.0933052345 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
9 Hb_161568_010 0.0996274496 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_003449_100 0.1053059873 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
11 Hb_004096_160 0.1067381975 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
12 Hb_011716_010 0.1069992477 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
13 Hb_039021_010 0.1095580519 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
14 Hb_000958_080 0.1109591223 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000890_160 0.1115986784 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
16 Hb_000940_050 0.1131099007 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
17 Hb_002686_080 0.1145725741 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
18 Hb_001307_190 0.1149919396 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_003687_120 0.1156301082 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
20 Hb_005903_020 0.1166186814 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_005144_210 Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_005144_210--Hb_004712_190 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_014231_020 Hb_014231_020 Hb_005144_210--Hb_014231_020 Hb_000098_150 Hb_000098_150 Hb_005144_210--Hb_000098_150 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080 Hb_004108_210--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_005903_020 Hb_005903_020 Hb_004108_210--Hb_005903_020 Hb_004108_210--Hb_004712_190 Hb_003449_100 Hb_003449_100 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_007919_110 Hb_007919_110 Hb_000703_160--Hb_007919_110 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000958_080 Hb_000958_080 Hb_000703_160--Hb_000958_080 Hb_001369_470--Hb_004108_210 Hb_001369_470--Hb_000098_150 Hb_001369_470--Hb_001221_580 Hb_001369_470--Hb_161568_010 Hb_001369_470--Hb_005903_020 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_014231_020--Hb_000703_160 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_000098_150--Hb_014231_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23635 3.49119 9.13273 5.51029 2.14575 1.32366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96152 1.92068 1.65989 3.62855 1.70492

CAGE analysis