Hb_001863_160

Information

Type -
Description -
Location Contig1863: 117451-119849
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10000g
description POPTRDRAFT_711617; 14-3-3 protein 32kDa endonuclease
nr
ID XP_012067905.1
description PREDICTED: 14-3-3-like protein [Jatropha curcas]
swissprot
ID P93343
description 14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1
trembl
ID A0A067L2F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15820 PE=3 SV=1
Gene Ontology
ID GO:0004519
description 14-3-3-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18341: 117450-119780
cDNA
(Sanger)
(ID:Location)		 001_D07.ab1: 118098-119780 , 014_G05.ab1: 118111-119780 , 014_P20.ab1: 118535-119751 , 026_B01.ab1: 119124-119469 , 047_N04.ab1: 118050-119725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_160 0.0 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
2 Hb_000098_150 0.0881617859 - - DNA helicase hus2, putative [Ricinus communis]
3 Hb_014231_020 0.0893824029 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
4 Hb_005144_210 0.0933052345 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004712_190 0.0941760007 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
6 Hb_007741_130 0.1034765548 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
7 Hb_001191_080 0.1100637827 - - protein with unknown function [Ricinus communis]
8 Hb_000046_310 0.113414562 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
9 Hb_004108_210 0.1153366892 - - phenazine biosynthesis protein, putative [Ricinus communis]
10 Hb_001155_050 0.121210587 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_000703_160 0.1246786682 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
12 Hb_000787_080 0.1253170267 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
13 Hb_002686_150 0.1261804984 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000818_120 0.1327659025 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000009_220 0.1328783171 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
16 Hb_003449_100 0.1349304899 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
17 Hb_001221_580 0.1353361181 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
18 Hb_021576_150 0.1357026894 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
19 Hb_143813_020 0.1364715519 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
20 Hb_005903_020 0.1375322234 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_001863_160 Hb_001863_160 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_014231_020 Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_004108_210 Hb_004108_210 Hb_000098_150--Hb_004108_210 Hb_000098_150--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_000098_150--Hb_014231_020 Hb_014231_020--Hb_004712_190 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190 Hb_005144_210--Hb_004712_190 Hb_005144_210--Hb_004108_210 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_004712_190--Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_001191_080--Hb_014231_020 Hb_001191_080--Hb_005245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.474 85.4365 212.803 122.62 23.1423 19.6675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1061 49.1803 35.4933 51.1948 36.2813

CAGE analysis