Hb_007741_130

Information

Type -
Description -
Location Contig7741: 92817-95772
Sequence    

Annotation

kegg
ID crb:CARUB_v10024627mg
description hypothetical protein
nr
ID KJB41069.1
description hypothetical protein B456_007G089000 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2S9V1
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G089000 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57732: 92830-95691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_130 0.0 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
2 Hb_001191_080 0.0868308444 - - protein with unknown function [Ricinus communis]
3 Hb_001633_090 0.0963132956 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
4 Hb_007850_030 0.1019767026 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
5 Hb_005245_120 0.10205375 - - XPA-binding protein, putative [Ricinus communis]
6 Hb_001863_160 0.1034765548 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_053709_050 0.1056243227 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000926_200 0.1073222481 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
9 Hb_004117_190 0.1108019892 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
10 Hb_000622_130 0.1109581533 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
11 Hb_004712_190 0.119507367 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
12 Hb_002693_030 0.1214654749 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
13 Hb_004994_210 0.1216979725 - - phosphomannomutase family protein [Populus trichocarpa]
14 Hb_021576_150 0.1249511883 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
15 Hb_000580_100 0.125078925 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
16 Hb_004984_030 0.1291896049 - - protein with unknown function [Ricinus communis]
17 Hb_146255_020 0.1301638699 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
18 Hb_001804_090 0.1303210047 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
19 Hb_005914_110 0.1309639646 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_100790_010 0.1312670178 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007741_130 Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_001863_160 Hb_001863_160 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_001191_080--Hb_005245_120 Hb_001633_090--Hb_053709_050 Hb_004994_210 Hb_004994_210 Hb_001633_090--Hb_004994_210 Hb_001633_090--Hb_007850_030 Hb_002693_030 Hb_002693_030 Hb_001633_090--Hb_002693_030 Hb_000742_010 Hb_000742_010 Hb_001633_090--Hb_000742_010 Hb_007850_030--Hb_002693_030 Hb_007850_030--Hb_053709_050 Hb_007850_030--Hb_004994_210 Hb_001482_050 Hb_001482_050 Hb_007850_030--Hb_001482_050 Hb_000227_390 Hb_000227_390 Hb_007850_030--Hb_000227_390 Hb_032202_100 Hb_032202_100 Hb_005245_120--Hb_032202_100 Hb_005245_120--Hb_000926_200 Hb_001804_080 Hb_001804_080 Hb_005245_120--Hb_001804_080 Hb_000116_490 Hb_000116_490 Hb_005245_120--Hb_000116_490 Hb_001357_310 Hb_001357_310 Hb_005245_120--Hb_001357_310 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_001863_160--Hb_004712_190 Hb_001863_160--Hb_001191_080 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_000603_160 Hb_000603_160 Hb_053709_050--Hb_000603_160 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0873 18.8769 49.0504 33.076 5.65175 7.47431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1829 23.8227 12.7668 14.2744 9.95814

CAGE analysis