Hb_000742_010

Information

Type -
Description -
Location Contig742: 7055-11618
Sequence    

Annotation

kegg
ID rcu:RCOM_1338000
description ferredoxin--NADP reductase, putative (EC:1.18.1.2)
nr
ID XP_012075620.1
description PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q41014
description Ferredoxin--NADP reductase, root isozyme, chloroplastic OS=Pisum sativum PE=2 SV=2
trembl
ID B9SB31
description Ferredoxin--NADP reductase OS=Ricinus communis GN=RCOM_1338000 PE=3 SV=1
Gene Ontology
ID GO:0004324
description ferredoxin--nadp root chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56475: 7122-11691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_010 0.0 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000076_210 0.0885720087 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
3 Hb_000174_260 0.0903307281 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
4 Hb_001633_090 0.1021617539 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
5 Hb_000913_030 0.1027511999 - - nuclease, putative [Ricinus communis]
6 Hb_006824_010 0.1035982135 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
7 Hb_005754_040 0.1038548258 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
8 Hb_001205_080 0.1047580072 - - Protein FAM96B, putative [Ricinus communis]
9 Hb_004994_210 0.1081279671 - - phosphomannomutase family protein [Populus trichocarpa]
10 Hb_005946_150 0.1092573289 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
11 Hb_000260_470 0.1099989784 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
12 Hb_003605_020 0.1118735201 - - exocyst complex component sec6, putative [Ricinus communis]
13 Hb_003531_070 0.1149695438 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
14 Hb_008304_020 0.115494995 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
15 Hb_000229_050 0.115709754 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
16 Hb_000579_080 0.1161517251 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
17 Hb_133004_010 0.1165565407 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
18 Hb_007850_030 0.1184196179 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
19 Hb_000330_090 0.1187905587 - - ornithine carbamoyltransferase, putative [Ricinus communis]
20 Hb_000076_220 0.1209251468 - - thioredoxin domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000742_010 Hb_000742_010 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_000913_030 Hb_000913_030 Hb_000742_010--Hb_000913_030 Hb_006824_010 Hb_006824_010 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_008304_020 Hb_008304_020 Hb_000076_210--Hb_008304_020 Hb_001300_280 Hb_001300_280 Hb_000076_210--Hb_001300_280 Hb_172979_010 Hb_172979_010 Hb_000076_210--Hb_172979_010 Hb_001635_110 Hb_001635_110 Hb_000076_210--Hb_001635_110 Hb_000120_890 Hb_000120_890 Hb_000076_210--Hb_000120_890 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_053709_050 Hb_053709_050 Hb_001633_090--Hb_053709_050 Hb_004994_210 Hb_004994_210 Hb_001633_090--Hb_004994_210 Hb_007850_030 Hb_007850_030 Hb_001633_090--Hb_007850_030 Hb_007741_130 Hb_007741_130 Hb_001633_090--Hb_007741_130 Hb_002693_030 Hb_002693_030 Hb_001633_090--Hb_002693_030 Hb_001053_190 Hb_001053_190 Hb_000913_030--Hb_001053_190 Hb_002675_250 Hb_002675_250 Hb_000913_030--Hb_002675_250 Hb_000229_050 Hb_000229_050 Hb_000913_030--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_000913_030--Hb_000579_080 Hb_005784_070 Hb_005784_070 Hb_000913_030--Hb_005784_070 Hb_002006_150 Hb_002006_150 Hb_006824_010--Hb_002006_150 Hb_007904_300 Hb_007904_300 Hb_006824_010--Hb_007904_300 Hb_000139_080 Hb_000139_080 Hb_006824_010--Hb_000139_080 Hb_006189_020 Hb_006189_020 Hb_006824_010--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_006824_010--Hb_003098_070 Hb_006824_010--Hb_001269_130 Hb_000395_280 Hb_000395_280 Hb_005754_040--Hb_000395_280 Hb_005754_040--Hb_003605_020 Hb_002676_120 Hb_002676_120 Hb_005754_040--Hb_002676_120 Hb_006775_120 Hb_006775_120 Hb_005754_040--Hb_006775_120 Hb_000072_300 Hb_000072_300 Hb_005754_040--Hb_000072_300 Hb_005754_040--Hb_000684_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.28585 6.97582 23.0998 16.302 4.42381 4.01182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6094 7.64513 8.48519 18.8653 12.362

CAGE analysis