Hb_005784_070

Information

Type -
Description -
Location Contig5784: 76708-98045
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03710g
description POPTRDRAFT_763986; hypothetical protein
nr
ID XP_012086072.1
description PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
swissprot
ID Q6Q4D0
description Protein TONSOKU OS=Arabidopsis thaliana GN=TSK PE=1 SV=2
trembl
ID A0A067JTI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22229 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein tonsoku

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49746: 76666-82558 , PASA_asmbl_49747: 84559-92763 , PASA_asmbl_49748: 95002-96097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_070 0.0 - - PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
2 Hb_004032_160 0.1068686881 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
3 Hb_000913_030 0.11057295 - - nuclease, putative [Ricinus communis]
4 Hb_001053_190 0.1137448971 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_006120_040 0.1139058952 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
6 Hb_016448_010 0.1171246882 - - Protein MYG1, putative [Ricinus communis]
7 Hb_004712_190 0.123647127 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
8 Hb_000211_100 0.1259321179 - - PREDICTED: biotin synthase [Jatropha curcas]
9 Hb_000229_050 0.1262287043 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
10 Hb_000086_270 0.1273915578 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_002686_080 0.1276715545 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
12 Hb_001102_070 0.1286500056 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
13 Hb_000371_010 0.1289057796 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
14 Hb_000739_240 0.1291160176 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_001500_120 0.1308953775 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_005649_100 0.1346770928 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_000340_130 0.1360401122 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
18 Hb_011671_310 0.1365357734 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
19 Hb_003506_030 0.1374204761 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_002326_110 0.1377597708 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]

Gene co-expression network

sample Hb_005784_070 Hb_005784_070 Hb_004032_160 Hb_004032_160 Hb_005784_070--Hb_004032_160 Hb_000913_030 Hb_000913_030 Hb_005784_070--Hb_000913_030 Hb_001053_190 Hb_001053_190 Hb_005784_070--Hb_001053_190 Hb_006120_040 Hb_006120_040 Hb_005784_070--Hb_006120_040 Hb_016448_010 Hb_016448_010 Hb_005784_070--Hb_016448_010 Hb_004712_190 Hb_004712_190 Hb_005784_070--Hb_004712_190 Hb_001268_340 Hb_001268_340 Hb_004032_160--Hb_001268_340 Hb_001519_040 Hb_001519_040 Hb_004032_160--Hb_001519_040 Hb_001195_640 Hb_001195_640 Hb_004032_160--Hb_001195_640 Hb_000030_160 Hb_000030_160 Hb_004032_160--Hb_000030_160 Hb_004032_160--Hb_001053_190 Hb_000913_030--Hb_001053_190 Hb_002675_250 Hb_002675_250 Hb_000913_030--Hb_002675_250 Hb_000742_010 Hb_000742_010 Hb_000913_030--Hb_000742_010 Hb_000229_050 Hb_000229_050 Hb_000913_030--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_000913_030--Hb_000579_080 Hb_002686_080 Hb_002686_080 Hb_001053_190--Hb_002686_080 Hb_003540_050 Hb_003540_050 Hb_001053_190--Hb_003540_050 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_001053_190--Hb_016448_010 Hb_000663_080 Hb_000663_080 Hb_006120_040--Hb_000663_080 Hb_000085_190 Hb_000085_190 Hb_006120_040--Hb_000085_190 Hb_000086_270 Hb_000086_270 Hb_006120_040--Hb_000086_270 Hb_003228_100 Hb_003228_100 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_000011_240 Hb_000011_240 Hb_006120_040--Hb_000011_240 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_014231_020 Hb_014231_020 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.934782 0.618245 1.92542 0.793463 0.288856 0.383381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.364162 0.227582 0.404768 0.701051 0.668423

CAGE analysis