Hb_000011_240

Information

Type -
Description -
Location Contig11: 296431-300839
Sequence    

Annotation

kegg
ID rcu:RCOM_0333240
description hypothetical protein
nr
ID XP_012068785.1
description PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24620 PE=4 SV=1
Gene Ontology
ID GO:0003677
description muscle m-line assembly protein unc- isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02989: 296461-300828 , PASA_asmbl_02991: 301198-301430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_240 0.0 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
2 Hb_000663_080 0.0740189932 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
3 Hb_006120_040 0.0907824799 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
4 Hb_001430_020 0.0965095419 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000085_190 0.0994915455 - - FtsZ1 protein [Manihot esculenta]
6 Hb_102948_010 0.1027429686 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
7 Hb_000245_150 0.1043534524 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
8 Hb_000445_070 0.1045441187 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
9 Hb_003225_020 0.1097802078 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
10 Hb_006569_040 0.1099933576 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
11 Hb_002218_020 0.1102241364 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_000270_600 0.1116677173 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
13 Hb_003529_140 0.1121834443 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
14 Hb_001828_120 0.1134733571 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
15 Hb_021650_010 0.1140044737 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
16 Hb_000802_130 0.1147842616 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
17 Hb_001930_030 0.1149926214 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
18 Hb_087313_010 0.1156986032 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001409_060 0.1172059585 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_000555_020 0.1174372771 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_240 Hb_000011_240 Hb_000663_080 Hb_000663_080 Hb_000011_240--Hb_000663_080 Hb_006120_040 Hb_006120_040 Hb_000011_240--Hb_006120_040 Hb_001430_020 Hb_001430_020 Hb_000011_240--Hb_001430_020 Hb_000085_190 Hb_000085_190 Hb_000011_240--Hb_000085_190 Hb_102948_010 Hb_102948_010 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150 Hb_000663_080--Hb_006120_040 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100 Hb_006120_040--Hb_000085_190 Hb_006120_040--Hb_000086_270 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_001430_020--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_005235_070 Hb_005235_070 Hb_001430_020--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_001430_020--Hb_000555_020 Hb_000445_070 Hb_000445_070 Hb_000085_190--Hb_000445_070 Hb_005731_110 Hb_005731_110 Hb_000085_190--Hb_005731_110 Hb_000757_030 Hb_000757_030 Hb_000085_190--Hb_000757_030 Hb_005162_110 Hb_005162_110 Hb_000085_190--Hb_005162_110 Hb_000640_160 Hb_000640_160 Hb_000085_190--Hb_000640_160 Hb_102948_010--Hb_002218_020 Hb_102948_010--Hb_087313_010 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_102948_010--Hb_000555_020 Hb_007035_040 Hb_007035_040 Hb_000245_150--Hb_007035_040 Hb_000205_260 Hb_000205_260 Hb_000245_150--Hb_000205_260 Hb_005523_020 Hb_005523_020 Hb_000245_150--Hb_005523_020 Hb_007283_010 Hb_007283_010 Hb_000245_150--Hb_007283_010 Hb_000457_230 Hb_000457_230 Hb_000245_150--Hb_000457_230 Hb_000878_160 Hb_000878_160 Hb_000245_150--Hb_000878_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2033 17.9568 36.8098 8.11372 8.75876 10.9704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5979 7.14894 9.01457 7.41927 26.5407

CAGE analysis