Hb_000663_080

Information

Type transcription factor
Description TF Family: HB
Location Contig663: 100133-112150
Sequence    

Annotation

kegg
ID rcu:RCOM_0174220
description Homeobox protein HAT3.1, putative
nr
ID XP_002527467.1
description Homeobox protein HAT3.1, putative [Ricinus communis]
swissprot
ID Q04996
description Homeobox protein HAT3.1 OS=Arabidopsis thaliana GN=HAT3.1 PE=2 SV=3
trembl
ID B9SN98
description Homeobox protein HAT3.1, putative OS=Ricinus communis GN=RCOM_0174220 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53103: 103016-103226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000663_080 0.0 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
2 Hb_006120_040 0.0731742953 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
3 Hb_000011_240 0.0740189932 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
4 Hb_000086_270 0.084221703 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_000975_210 0.0844433896 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
6 Hb_006846_170 0.0850374437 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
7 Hb_003228_100 0.0929012635 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
8 Hb_012438_030 0.0936418587 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_102948_010 0.0945457428 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
10 Hb_002218_020 0.0962459843 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_087313_010 0.0993658092 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001703_040 0.1012442218 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_001409_060 0.10130697 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
14 Hb_004774_090 0.1032559269 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
15 Hb_000788_030 0.1040025826 - - PREDICTED: dynamin-2A [Jatropha curcas]
16 Hb_012286_020 0.1040383286 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
17 Hb_000012_270 0.1056157245 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
18 Hb_001396_020 0.1056729763 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_001430_020 0.105959141 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000120_380 0.1063955245 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000663_080 Hb_000663_080 Hb_006120_040 Hb_006120_040 Hb_000663_080--Hb_006120_040 Hb_000011_240 Hb_000011_240 Hb_000663_080--Hb_000011_240 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100 Hb_000085_190 Hb_000085_190 Hb_006120_040--Hb_000085_190 Hb_006120_040--Hb_000086_270 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_006120_040--Hb_000011_240 Hb_001430_020 Hb_001430_020 Hb_000011_240--Hb_001430_020 Hb_000011_240--Hb_000085_190 Hb_102948_010 Hb_102948_010 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_016448_010 Hb_016448_010 Hb_000086_270--Hb_016448_010 Hb_004324_360 Hb_004324_360 Hb_000975_210--Hb_004324_360 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000476_060 Hb_000476_060 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_004774_090 Hb_004774_090 Hb_000975_210--Hb_004774_090 Hb_006846_170--Hb_002249_020 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_006846_170--Hb_003228_100 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_003228_100--Hb_002249_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25236 2.31979 4.84551 1.51021 1.32554 1.2844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.717985 0.964427 1.51294 1.28561 3.04228

CAGE analysis