Hb_000086_270

Information

Type -
Description -
Location Contig86: 221529-238222
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03730g
description POPTRDRAFT_816074; hypothetical protein
nr
ID XP_002302034.1
description hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID B9GRN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03730g PE=3 SV=1
Gene Ontology
ID GO:0009506
description casein kinase i-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60723: 231194-238187 , PASA_asmbl_60724: 237215-237408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_270 0.0 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
2 Hb_006120_040 0.0798287597 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
3 Hb_000327_330 0.0803776817 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002249_020 0.0838650509 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
5 Hb_000663_080 0.084221703 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
6 Hb_006438_020 0.0855730552 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
7 Hb_016448_010 0.0862230329 - - Protein MYG1, putative [Ricinus communis]
8 Hb_006846_170 0.0865420446 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
9 Hb_000956_040 0.0893539321 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
10 Hb_021596_020 0.0921788392 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
11 Hb_001009_120 0.0929176209 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
12 Hb_004712_190 0.0931857601 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
13 Hb_012633_050 0.0934674414 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000318_220 0.0941331094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003449_100 0.0942206047 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
16 Hb_012286_020 0.0955335518 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
17 Hb_000787_080 0.0962891089 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
18 Hb_004774_090 0.0968135267 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
19 Hb_061256_010 0.0971563901 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
20 Hb_003687_120 0.0980808894 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]

Gene co-expression network

sample Hb_000086_270 Hb_000086_270 Hb_006120_040 Hb_006120_040 Hb_000086_270--Hb_006120_040 Hb_000327_330 Hb_000327_330 Hb_000086_270--Hb_000327_330 Hb_002249_020 Hb_002249_020 Hb_000086_270--Hb_002249_020 Hb_000663_080 Hb_000663_080 Hb_000086_270--Hb_000663_080 Hb_006438_020 Hb_006438_020 Hb_000086_270--Hb_006438_020 Hb_016448_010 Hb_016448_010 Hb_000086_270--Hb_016448_010 Hb_006120_040--Hb_000663_080 Hb_000085_190 Hb_000085_190 Hb_006120_040--Hb_000085_190 Hb_003228_100 Hb_003228_100 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_000011_240 Hb_000011_240 Hb_006120_040--Hb_000011_240 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_006846_170 Hb_006846_170 Hb_002249_020--Hb_006846_170 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_002249_020--Hb_003228_100 Hb_000663_080--Hb_000011_240 Hb_000975_210 Hb_000975_210 Hb_000663_080--Hb_000975_210 Hb_000663_080--Hb_006846_170 Hb_000663_080--Hb_003228_100 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9503 39.9879 82.3998 36.8268 16.4452 15.8669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4553 15.8515 19.2761 25.52 38.7974

CAGE analysis