Hb_006846_170

Information

Type -
Description -
Location Contig6846: 124960-129231
Sequence    

Annotation

kegg
ID rcu:RCOM_1503220
description catalytic, putative
nr
ID XP_012090559.1
description PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
swissprot
ID Q940Q8
description Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1
trembl
ID E6NU04
description JHL07K02.4 protein OS=Jatropha curcas GN=JHL07K02.4 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable beta- -xylosyltransferase irx10l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54083: 124706-129216 , PASA_asmbl_54084: 124706-129024
cDNA
(Sanger)
(ID:Location)		 031_N05.ab1: 126712-129216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_170 0.0 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
2 Hb_002249_020 0.0645393425 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
3 Hb_000788_030 0.0736253778 - - PREDICTED: dynamin-2A [Jatropha curcas]
4 Hb_003228_100 0.0783389973 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
5 Hb_000975_210 0.0817572246 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
6 Hb_088584_010 0.0822024014 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
7 Hb_023344_140 0.082947965 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
8 Hb_000069_610 0.0833044034 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
9 Hb_000663_080 0.0850374437 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
10 Hb_000086_270 0.0865420446 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_000562_070 0.0888671637 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_000317_110 0.0892947186 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_003925_060 0.0902410741 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
14 Hb_004774_090 0.0910936743 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
15 Hb_087313_010 0.0919143599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_111552_010 0.0922936575 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
17 Hb_009158_060 0.0923841575 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
18 Hb_004324_360 0.0931130218 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
19 Hb_000179_190 0.0932344808 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
20 Hb_000155_170 0.0957111696 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_006846_170 Hb_006846_170 Hb_002249_020 Hb_002249_020 Hb_006846_170--Hb_002249_020 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_003228_100 Hb_003228_100 Hb_006846_170--Hb_003228_100 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_088584_010 Hb_088584_010 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_002249_020--Hb_003228_100 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_000012_270 Hb_000012_270 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_002326_110 Hb_002326_110 Hb_003228_100--Hb_002326_110 Hb_000975_210--Hb_004324_360 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_004774_090 Hb_004774_090 Hb_000975_210--Hb_004774_090 Hb_017214_040 Hb_017214_040 Hb_088584_010--Hb_017214_040 Hb_088584_010--Hb_002249_020 Hb_000069_610 Hb_000069_610 Hb_088584_010--Hb_000069_610 Hb_000179_190 Hb_000179_190 Hb_088584_010--Hb_000179_190 Hb_111552_010 Hb_111552_010 Hb_088584_010--Hb_111552_010 Hb_170077_010 Hb_170077_010 Hb_023344_140--Hb_170077_010 Hb_000046_600 Hb_000046_600 Hb_023344_140--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_023344_140--Hb_005333_140 Hb_005403_010 Hb_005403_010 Hb_023344_140--Hb_005403_010 Hb_000358_220 Hb_000358_220 Hb_023344_140--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_023344_140--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.59728 15.3047 23.5429 14.9236 9.46367 6.48694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13809 5.20003 8.39035 7.35702 17.6938

CAGE analysis