Hb_000069_610

Information

Type -
Description -
Location Contig69: 669370-676782
Sequence    

Annotation

kegg
ID rcu:RCOM_0149760
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_012083254.1
description PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
swissprot
ID Q9SYX2
description Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1
trembl
ID A0A067JXA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14288 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein suppressor of phya-105 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54273: 670380-672169 , PASA_asmbl_54274: 670380-672092 , PASA_asmbl_54275: 671722-671848 , PASA_asmbl_54276: 671893-672148 , PASA_asmbl_54278: 672537-675072 , PASA_asmbl_54280: 675166-676594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_610 0.0 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
2 Hb_000788_030 0.0816089219 - - PREDICTED: dynamin-2A [Jatropha curcas]
3 Hb_006846_170 0.0833044034 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
4 Hb_004705_160 0.0869314928 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
5 Hb_001478_040 0.0900909652 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
6 Hb_088584_010 0.0913573757 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
7 Hb_000748_090 0.0939514395 - - glucose inhibited division protein A, putative [Ricinus communis]
8 Hb_000208_190 0.0957151041 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
9 Hb_005214_140 0.0960270803 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
10 Hb_022092_030 0.0964326894 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
11 Hb_001301_270 0.0970080019 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
12 Hb_022250_010 0.0975858619 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
13 Hb_000107_340 0.1005266453 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
14 Hb_006261_050 0.1008394169 transcription factor TF Family: C2C2-YABBY DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_000270_190 0.1011217631 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
16 Hb_001329_250 0.1014161401 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
17 Hb_002600_070 0.1038738286 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
18 Hb_004774_090 0.1039923159 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
19 Hb_004324_360 0.1051715774 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
20 Hb_000555_020 0.1054663527 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_610 Hb_000069_610 Hb_000788_030 Hb_000788_030 Hb_000069_610--Hb_000788_030 Hb_006846_170 Hb_006846_170 Hb_000069_610--Hb_006846_170 Hb_004705_160 Hb_004705_160 Hb_000069_610--Hb_004705_160 Hb_001478_040 Hb_001478_040 Hb_000069_610--Hb_001478_040 Hb_088584_010 Hb_088584_010 Hb_000069_610--Hb_088584_010 Hb_000748_090 Hb_000748_090 Hb_000069_610--Hb_000748_090 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_004324_360 Hb_004324_360 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_000788_030--Hb_006846_170 Hb_002249_020 Hb_002249_020 Hb_006846_170--Hb_002249_020 Hb_003228_100 Hb_003228_100 Hb_006846_170--Hb_003228_100 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_006846_170--Hb_088584_010 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_000862_100 Hb_000862_100 Hb_004705_160--Hb_000862_100 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_004705_160--Hb_000748_090 Hb_068079_010 Hb_068079_010 Hb_004705_160--Hb_068079_010 Hb_004705_160--Hb_000788_030 Hb_004032_200 Hb_004032_200 Hb_001478_040--Hb_004032_200 Hb_005701_050 Hb_005701_050 Hb_001478_040--Hb_005701_050 Hb_000059_230 Hb_000059_230 Hb_001478_040--Hb_000059_230 Hb_007597_010 Hb_007597_010 Hb_001478_040--Hb_007597_010 Hb_170077_010 Hb_170077_010 Hb_001478_040--Hb_170077_010 Hb_017214_040 Hb_017214_040 Hb_088584_010--Hb_017214_040 Hb_088584_010--Hb_002249_020 Hb_000179_190 Hb_000179_190 Hb_088584_010--Hb_000179_190 Hb_111552_010 Hb_111552_010 Hb_088584_010--Hb_111552_010 Hb_007012_030 Hb_007012_030 Hb_000748_090--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_000748_090--Hb_002600_070 Hb_068804_090 Hb_068804_090 Hb_000748_090--Hb_068804_090 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000482_050 Hb_000482_050 Hb_000748_090--Hb_000482_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.65604 6.71713 8.23609 7.70798 3.66657 3.54382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58818 3.53055 4.1491 2.83367 10.2544

CAGE analysis