Hb_023344_140

Information

Type -
Description -
Location Contig23344: 149155-156063
Sequence    

Annotation

kegg
ID rcu:RCOM_0541360
description nucleotide binding protein, putative
nr
ID XP_012085209.1
description PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
swissprot
ID Q0VA16
description WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70 PE=2 SV=1
trembl
ID A0A067JRD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17610 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat-containing protein 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24537: 149361-156145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_140 0.0 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
2 Hb_170077_010 0.0561733921 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
3 Hb_000046_600 0.0591886147 - - PREDICTED: cullin-1-like [Jatropha curcas]
4 Hb_005333_140 0.0603801822 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
5 Hb_005403_010 0.0611592626 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
6 Hb_000358_220 0.0634295923 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
7 Hb_000996_020 0.0682790934 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
8 Hb_002461_020 0.0690072352 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
9 Hb_000317_110 0.0699592756 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_004659_090 0.0728032505 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
11 Hb_000529_060 0.0728681906 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
12 Hb_000110_350 0.074432148 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
13 Hb_000260_760 0.0745301118 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
14 Hb_000270_190 0.0746060088 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
15 Hb_000179_190 0.0757529988 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
16 Hb_000030_140 0.078472673 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_005701_050 0.0805482954 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
18 Hb_000975_210 0.0808560098 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
19 Hb_000336_020 0.081972631 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
20 Hb_006846_170 0.082947965 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]

Gene co-expression network

sample Hb_023344_140 Hb_023344_140 Hb_170077_010 Hb_170077_010 Hb_023344_140--Hb_170077_010 Hb_000046_600 Hb_000046_600 Hb_023344_140--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_023344_140--Hb_005333_140 Hb_005403_010 Hb_005403_010 Hb_023344_140--Hb_005403_010 Hb_000358_220 Hb_000358_220 Hb_023344_140--Hb_000358_220 Hb_000996_020 Hb_000996_020 Hb_023344_140--Hb_000996_020 Hb_000110_350 Hb_000110_350 Hb_170077_010--Hb_000110_350 Hb_170077_010--Hb_005403_010 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_005333_140--Hb_002461_020 Hb_005333_140--Hb_000529_060 Hb_005333_140--Hb_000996_020 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_005403_010--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_005403_010--Hb_000260_760 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000996_020--Hb_002461_020 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2664 23.3627 25.8194 20.7801 13.1922 12.4999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04939 6.35999 10.3188 16.1087 22.5747

CAGE analysis