Hb_004705_160

Information

Type -
Description -
Location Contig4705: 175972-183616
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16110g
description POPTRDRAFT_554690; RNA recognition motif-containing family protein
nr
ID XP_012088718.1
description PREDICTED: protein MEI2-like 4 [Jatropha curcas]
swissprot
ID Q64M78
description Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1
trembl
ID B9GZ23
description RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0003s16110g PE=4 SV=2
Gene Ontology
ID GO:0000166
description protein mei2-like 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44245: 175977-177042 , PASA_asmbl_44246: 176974-177771 , PASA_asmbl_44247: 177790-183597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_160 0.0 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
2 Hb_000862_100 0.0645792383 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
3 Hb_138585_030 0.0698495399 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
4 Hb_000208_190 0.0753091965 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
5 Hb_000748_090 0.0758076964 - - glucose inhibited division protein A, putative [Ricinus communis]
6 Hb_068079_010 0.0772544669 - - -
7 Hb_000788_030 0.0776994728 - - PREDICTED: dynamin-2A [Jatropha curcas]
8 Hb_008705_020 0.0784603488 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_068804_090 0.081473867 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
10 Hb_001117_110 0.0820467625 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_000815_300 0.0830871674 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
12 Hb_030736_040 0.0831897924 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
13 Hb_006970_020 0.0847962917 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_000069_610 0.0869314928 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
15 Hb_002684_020 0.0871705785 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
16 Hb_000243_120 0.0874116019 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
17 Hb_006916_050 0.0899352361 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
18 Hb_032202_220 0.0903691974 - - ring finger protein, putative [Ricinus communis]
19 Hb_001301_270 0.0910078068 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
20 Hb_000107_250 0.0923160162 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_004705_160 Hb_004705_160 Hb_000862_100 Hb_000862_100 Hb_004705_160--Hb_000862_100 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_068079_010 Hb_068079_010 Hb_004705_160--Hb_068079_010 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030 Hb_006970_020 Hb_006970_020 Hb_000862_100--Hb_006970_020 Hb_000862_100--Hb_068079_010 Hb_000815_300 Hb_000815_300 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_000862_100--Hb_000406_210 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_022378_010 Hb_022378_010 Hb_000208_190--Hb_022378_010 Hb_005000_080 Hb_005000_080 Hb_000208_190--Hb_005000_080 Hb_000208_190--Hb_138585_030 Hb_000208_190--Hb_000788_030 Hb_000208_190--Hb_010344_020 Hb_007012_030 Hb_007012_030 Hb_000748_090--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_000748_090--Hb_002600_070 Hb_000748_090--Hb_068804_090 Hb_004324_360 Hb_004324_360 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000482_050 Hb_000482_050 Hb_000748_090--Hb_000482_050 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79351 4.62915 8.91034 7.66318 3.85314 2.53014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18988 3.08987 3.71015 4.16134 11.4119

CAGE analysis