Hb_004774_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig4774: 90518-94018
Sequence    

Annotation

kegg
ID egr:104454821
description disease resistance protein At4g27190-like
nr
ID XP_012066788.1
description PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID A0A067L1X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00273 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44537: 90985-91225 , PASA_asmbl_44538: 93020-93641 , PASA_asmbl_44539: 93713-108085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004774_090 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
2 Hb_111552_010 0.0624823908 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
3 Hb_004324_360 0.0709648167 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
4 Hb_000956_040 0.0728891719 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
5 Hb_000975_210 0.0738668148 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
6 Hb_000788_030 0.0772976412 - - PREDICTED: dynamin-2A [Jatropha curcas]
7 Hb_000137_010 0.082344134 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
8 Hb_000748_090 0.084107849 - - glucose inhibited division protein A, putative [Ricinus communis]
9 Hb_000586_020 0.0850842094 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
10 Hb_005305_100 0.0870762323 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000476_060 0.0877688173 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
12 Hb_000452_030 0.0882132484 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
13 Hb_000179_190 0.0891847692 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
14 Hb_023344_140 0.0893190951 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
15 Hb_009158_060 0.0901057813 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
16 Hb_009288_010 0.0905911741 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_006846_170 0.0910936743 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
18 Hb_012633_050 0.0921648761 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000404_030 0.0930612438 - - PREDICTED: protein NAP1 [Jatropha curcas]
20 Hb_001178_030 0.0938219721 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004774_090 Hb_004774_090 Hb_111552_010 Hb_111552_010 Hb_004774_090--Hb_111552_010 Hb_004324_360 Hb_004324_360 Hb_004774_090--Hb_004324_360 Hb_000956_040 Hb_000956_040 Hb_004774_090--Hb_000956_040 Hb_000975_210 Hb_000975_210 Hb_004774_090--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004774_090--Hb_000788_030 Hb_000137_010 Hb_000137_010 Hb_004774_090--Hb_000137_010 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_111552_010--Hb_000956_040 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_004324_360--Hb_000975_210 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_005305_100 Hb_005305_100 Hb_000956_040--Hb_005305_100 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_000788_030--Hb_002684_020 Hb_000788_030--Hb_006846_170 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000137_010--Hb_000788_030 Hb_000137_010--Hb_005305_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45416 14.5399 17.7402 10.8062 4.34367 6.71256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47187 5.55959 7.34599 9.04683 15.1332

CAGE analysis