Hb_005305_100

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig5305: 56868-61379
Sequence    

Annotation

kegg
ID rcu:RCOM_1578050
description Nuclear transcription factor Y subunit A-1, putative
nr
ID XP_012090013.1
description PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LXV5
description Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1
trembl
ID B9RID0
description Nuclear transcription factor Y subunit A-1, putative OS=Ricinus communis GN=RCOM_1578050 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit a-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47338: 56896-61362 , PASA_asmbl_47340: 59128-59467 , PASA_asmbl_47341: 58568-58853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005305_100 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
2 Hb_000956_040 0.0615437489 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
3 Hb_000300_030 0.0624005888 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
4 Hb_000172_360 0.0643167233 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
5 Hb_008165_020 0.0660470955 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
6 Hb_000179_190 0.0667052629 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_000110_350 0.0686575027 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
8 Hb_000030_140 0.0688067133 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_003058_140 0.0710351088 - - conserved hypothetical protein [Ricinus communis]
10 Hb_060094_010 0.0713765784 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
11 Hb_000260_760 0.0714276027 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_000173_190 0.0722976688 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003929_210 0.0755101516 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_000034_110 0.0755649669 - - sentrin/sumo-specific protease, putative [Ricinus communis]
15 Hb_000035_100 0.0763588397 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_003540_250 0.0769064707 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
17 Hb_016461_020 0.0771691863 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000996_020 0.0777231252 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
19 Hb_170077_010 0.0783225018 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
20 Hb_004531_150 0.0784306557 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005305_100 Hb_005305_100 Hb_000956_040 Hb_000956_040 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_003661_010 Hb_003661_010 Hb_000300_030--Hb_003661_010 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_001414_010 Hb_001414_010 Hb_000300_030--Hb_001414_010 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_000172_360--Hb_008165_020 Hb_009158_060 Hb_009158_060 Hb_000172_360--Hb_009158_060 Hb_001159_060 Hb_001159_060 Hb_000172_360--Hb_001159_060 Hb_000331_100 Hb_000331_100 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12881 24.831 23.2373 19.8026 8.15469 9.67726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.47976 8.32301 5.98484 14.4361 19.8456

CAGE analysis