Hb_009158_060

Information

Type -
Description -
Location Contig9158: 61222-72763
Sequence    

Annotation

kegg
ID rcu:RCOM_0130230
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012083127.1
description PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
swissprot
ID Q9ZUZ2
description CDPK-related kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=1 SV=1
trembl
ID A0A067K826
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14206 PE=4 SV=1
Gene Ontology
ID GO:0004683
description cdpk-related kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62263: 61849-64939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009158_060 0.0 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
2 Hb_005305_130 0.0469973192 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
3 Hb_160608_010 0.0720370951 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
4 Hb_003661_010 0.0728584821 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
5 Hb_000172_360 0.072865637 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
6 Hb_000030_140 0.0741447716 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
7 Hb_008054_040 0.0744984031 - - PREDICTED: cullin-4 [Jatropha curcas]
8 Hb_000243_120 0.0755649052 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
9 Hb_001277_340 0.0770141693 - - aldo/keto reductase, putative [Ricinus communis]
10 Hb_001159_060 0.0772228179 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
11 Hb_002600_070 0.0777995491 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
12 Hb_002686_410 0.078859805 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
13 Hb_000034_110 0.0794408475 - - sentrin/sumo-specific protease, putative [Ricinus communis]
14 Hb_004324_360 0.0808434936 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
15 Hb_048476_080 0.0808711755 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
16 Hb_000748_090 0.0817565453 - - glucose inhibited division protein A, putative [Ricinus communis]
17 Hb_003058_140 0.0819216437 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000260_760 0.084248325 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_007012_030 0.0855350979 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
20 Hb_002461_020 0.0855920993 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009158_060 Hb_009158_060 Hb_005305_130 Hb_005305_130 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_005305_130--Hb_003661_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_005305_130--Hb_029552_020 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_160608_010--Hb_003661_010 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_000300_030 Hb_000300_030 Hb_003661_010--Hb_000300_030 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_003661_010--Hb_001414_010 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_005305_100 Hb_005305_100 Hb_000172_360--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_000172_360--Hb_001159_060 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000110_350 Hb_000110_350 Hb_000030_140--Hb_000110_350 Hb_008054_040--Hb_005333_140 Hb_033642_120 Hb_033642_120 Hb_008054_040--Hb_033642_120 Hb_008054_040--Hb_000996_020 Hb_032823_020 Hb_032823_020 Hb_008054_040--Hb_032823_020 Hb_008054_040--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03579 8.61174 11.1911 6.5393 4.59346 3.12839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92687 2.44875 3.05608 6.49464 10.6178

CAGE analysis