Hb_003687_080

Information

Type -
Description -
Location Contig3687: 48606-56591
Sequence    

Annotation

kegg
ID egr:104414479
description casein kinase I-like
nr
ID XP_012069858.1
description PREDICTED: casein kinase I-like [Jatropha curcas]
swissprot
ID P42158
description Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2
trembl
ID A0A067KZF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02346 PE=3 SV=1
Gene Ontology
ID GO:0004672
description casein kinase i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37912: 48634-56873 , PASA_asmbl_37915: 55601-55680
cDNA
(Sanger)
(ID:Location)		 046_P15.ab1: 56247-56873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_080 0.0 - - PREDICTED: casein kinase I-like [Jatropha curcas]
2 Hb_001160_110 0.0669290865 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
3 Hb_000327_330 0.0782592582 - - conserved hypothetical protein [Ricinus communis]
4 Hb_074399_010 0.083182885 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
5 Hb_000001_090 0.0835049788 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
6 Hb_005511_130 0.0869436556 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
7 Hb_000318_220 0.0876578126 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010620_050 0.0884336917 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
9 Hb_005665_090 0.0887041102 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
10 Hb_000260_490 0.0892479598 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
11 Hb_001623_490 0.0897941574 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
12 Hb_012779_080 0.0901866079 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
13 Hb_004158_050 0.0940401425 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
14 Hb_002026_090 0.0953861825 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
15 Hb_003449_100 0.0969979702 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
16 Hb_160271_010 0.097218103 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
17 Hb_002942_230 0.0976226767 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
18 Hb_001799_160 0.0977707439 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000320_190 0.098742856 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
20 Hb_004013_030 0.1007827056 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]

Gene co-expression network

sample Hb_003687_080 Hb_003687_080 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_000327_330 Hb_000327_330 Hb_003687_080--Hb_000327_330 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001663_130 Hb_001663_130 Hb_001160_110--Hb_001663_130 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410 Hb_004158_050 Hb_004158_050 Hb_001160_110--Hb_004158_050 Hb_000327_330--Hb_000318_220 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_000258_220 Hb_000258_220 Hb_074399_010--Hb_000258_220 Hb_007919_110 Hb_007919_110 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_000866_070 Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_000001_090--Hb_074399_010 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005357_110 Hb_005357_110 Hb_005511_130--Hb_005357_110 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_003883_010 Hb_003883_010 Hb_000318_220--Hb_003883_010 Hb_000318_220--Hb_002218_020 Hb_001504_010 Hb_001504_010 Hb_000318_220--Hb_001504_010 Hb_001053_190 Hb_001053_190 Hb_000318_220--Hb_001053_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1925 21.6725 61.084 44.7751 12.895 12.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1516 9.64496 10.1041 14.0155 34.5588

CAGE analysis