Hb_000258_220

Information

Type -
Description -
Location Contig258: 180252-186241
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14720g
description POPTRDRAFT_820739; hypothetical protein
nr
ID XP_012067633.1
description PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
swissprot
ID B9DFI7
description Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=2 SV=2
trembl
ID A0A067KYA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15598 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26821: 179943-186318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_220 0.0 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
2 Hb_029584_120 0.0701744142 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
3 Hb_000134_120 0.0804309018 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
4 Hb_000503_020 0.0824428107 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
5 Hb_074399_010 0.0826708256 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
6 Hb_000054_040 0.0890571957 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
7 Hb_003540_080 0.0900981025 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_007919_110 0.093049173 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
9 Hb_006120_050 0.0944733049 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
10 Hb_004724_390 0.0956009791 - - PREDICTED: nicalin-1-like [Populus euphratica]
11 Hb_000001_090 0.0965668193 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
12 Hb_012760_030 0.098315701 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
13 Hb_006588_160 0.0987438667 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005741_040 0.1008839209 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
15 Hb_002687_180 0.103732962 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
16 Hb_000260_490 0.1049346082 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
17 Hb_002942_230 0.1050377188 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
18 Hb_164010_050 0.1055535741 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
19 Hb_004228_120 0.106242827 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
20 Hb_000152_190 0.107507125 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_220 Hb_000258_220 Hb_029584_120 Hb_029584_120 Hb_000258_220--Hb_029584_120 Hb_000134_120 Hb_000134_120 Hb_000258_220--Hb_000134_120 Hb_000503_020 Hb_000503_020 Hb_000258_220--Hb_000503_020 Hb_074399_010 Hb_074399_010 Hb_000258_220--Hb_074399_010 Hb_000054_040 Hb_000054_040 Hb_000258_220--Hb_000054_040 Hb_003540_080 Hb_003540_080 Hb_000258_220--Hb_003540_080 Hb_000001_090 Hb_000001_090 Hb_029584_120--Hb_000001_090 Hb_029584_120--Hb_074399_010 Hb_004724_390 Hb_004724_390 Hb_029584_120--Hb_004724_390 Hb_000866_070 Hb_000866_070 Hb_029584_120--Hb_000866_070 Hb_002942_230 Hb_002942_230 Hb_029584_120--Hb_002942_230 Hb_003209_130 Hb_003209_130 Hb_000134_120--Hb_003209_130 Hb_003964_080 Hb_003964_080 Hb_000134_120--Hb_003964_080 Hb_000134_120--Hb_029584_120 Hb_007919_110 Hb_007919_110 Hb_000134_120--Hb_007919_110 Hb_000926_340 Hb_000926_340 Hb_000134_120--Hb_000926_340 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_003687_080 Hb_003687_080 Hb_074399_010--Hb_003687_080 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000054_040--Hb_000320_290 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_000054_040--Hb_001246_130 Hb_000054_040--Hb_005062_110 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_003540_080--Hb_002942_230 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4632 14.2905 34.7923 43.8064 13.4956 10.8076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.82999 4.22729 10.3917 16.7885 18.6209

CAGE analysis