Hb_000510_150

Information

Type -
Description -
Location Contig510: 141902-146570
Sequence    

Annotation

kegg
ID rcu:RCOM_0992230
description RNA splicing protein mrs2, mitochondrial, putative
nr
ID XP_012092097.1
description PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
swissprot
ID B8AJT9
description Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1
trembl
ID A0A067JP99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21830 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-i-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46283: 141805-146660 , PASA_asmbl_46284: 145020-145167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_150 0.0 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
2 Hb_002301_030 0.0767406098 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
3 Hb_000035_220 0.0770747507 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
4 Hb_000342_170 0.0857629783 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
5 Hb_000665_170 0.0863920587 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_003540_080 0.0873389641 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_002942_230 0.0876296908 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
8 Hb_002687_200 0.0919776164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_183086_030 0.0921828 - - GTPase-activating protein GYP7 [Gossypium arboreum]
10 Hb_001246_130 0.0954550997 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
11 Hb_000300_090 0.0955446789 - - catalytic, putative [Ricinus communis]
12 Hb_015884_020 0.0956847088 - - PREDICTED: protein PIR [Jatropha curcas]
13 Hb_033642_060 0.0963449595 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_003777_030 0.0981716311 - - Exocyst complex component, putative [Ricinus communis]
15 Hb_006970_020 0.1010038628 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
16 Hb_010672_020 0.1035455315 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
17 Hb_001411_130 0.1038160819 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
18 Hb_000503_020 0.1040687347 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
19 Hb_005062_060 0.1050653288 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
20 Hb_002552_040 0.1068761185 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_150 Hb_000510_150 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000035_220 Hb_000035_220 Hb_000510_150--Hb_000035_220 Hb_000342_170 Hb_000342_170 Hb_000510_150--Hb_000342_170 Hb_000665_170 Hb_000665_170 Hb_000510_150--Hb_000665_170 Hb_003540_080 Hb_003540_080 Hb_000510_150--Hb_003540_080 Hb_002942_230 Hb_002942_230 Hb_000510_150--Hb_002942_230 Hb_001246_130 Hb_001246_130 Hb_002301_030--Hb_001246_130 Hb_002687_200 Hb_002687_200 Hb_002301_030--Hb_002687_200 Hb_000027_200 Hb_000027_200 Hb_002301_030--Hb_000027_200 Hb_002301_030--Hb_000665_170 Hb_002808_020 Hb_002808_020 Hb_002301_030--Hb_002808_020 Hb_000035_220--Hb_003540_080 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_000860_060 Hb_000860_060 Hb_000342_170--Hb_000860_060 Hb_000342_170--Hb_002687_200 Hb_000665_170--Hb_000256_230 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_003540_080--Hb_002942_230 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_003540_080--Hb_000665_170 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_001411_130 Hb_001411_130 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002942_230--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66562 4.74132 9.21957 12.8238 2.09761 4.76617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07795 1.55212 2.93152 5.93646 9.8411

CAGE analysis