Hb_000389_030

Information

Type -
Description -
Location Contig389: 117640-126615
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23030g
description POPTRDRAFT_770546; ribophorin 1 family protein
nr
ID XP_012093268.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
swissprot
ID Q9ZUA0
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1
trembl
ID A0A067L7J4
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Jatropha curcas GN=JCGZ_20057 PE=3 SV=1
Gene Ontology
ID GO:0016021
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38949: 117603-126576
cDNA
(Sanger)
(ID:Location)		 046_F12.ab1: 117665-119480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_030 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
2 Hb_000256_230 0.0484619428 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
3 Hb_001021_010 0.0668899095 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
4 Hb_004126_040 0.0681857533 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000665_170 0.0732641486 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_004525_040 0.0772182772 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
7 Hb_000009_060 0.0781831619 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
8 Hb_003878_200 0.0814047147 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
9 Hb_011214_160 0.0814375977 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
10 Hb_003998_040 0.08377491 - - organic anion transporter, putative [Ricinus communis]
11 Hb_000418_020 0.0839723706 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
12 Hb_000622_110 0.0857556644 - - cmp-sialic acid transporter, putative [Ricinus communis]
13 Hb_000703_330 0.0858941341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002902_130 0.086578787 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_000390_050 0.0914444984 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_003209_130 0.0922206682 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
17 Hb_002486_050 0.0925596503 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_002740_080 0.0928122332 - - flap endonuclease-1, putative [Ricinus communis]
19 Hb_000367_180 0.0934989433 - - Heparanase-2, putative [Ricinus communis]
20 Hb_000160_070 0.0942751668 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]

Gene co-expression network

sample Hb_000389_030 Hb_000389_030 Hb_000256_230 Hb_000256_230 Hb_000389_030--Hb_000256_230 Hb_001021_010 Hb_001021_010 Hb_000389_030--Hb_001021_010 Hb_004126_040 Hb_004126_040 Hb_000389_030--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_000389_030--Hb_000665_170 Hb_004525_040 Hb_004525_040 Hb_000389_030--Hb_004525_040 Hb_000009_060 Hb_000009_060 Hb_000389_030--Hb_000009_060 Hb_000256_230--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_000256_230--Hb_003209_130 Hb_000256_230--Hb_004126_040 Hb_000622_110 Hb_000622_110 Hb_000256_230--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_000256_230--Hb_002486_050 Hb_001021_010--Hb_000009_060 Hb_001097_040 Hb_001097_040 Hb_001021_010--Hb_001097_040 Hb_003994_220 Hb_003994_220 Hb_001021_010--Hb_003994_220 Hb_000703_330 Hb_000703_330 Hb_001021_010--Hb_000703_330 Hb_001021_010--Hb_004525_040 Hb_004126_040--Hb_000665_170 Hb_004126_040--Hb_003209_130 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_000665_170--Hb_003209_130 Hb_007545_010 Hb_007545_010 Hb_000665_170--Hb_007545_010 Hb_033152_070 Hb_033152_070 Hb_004525_040--Hb_033152_070 Hb_004525_040--Hb_000256_230 Hb_004525_040--Hb_004126_040 Hb_010042_020 Hb_010042_020 Hb_004525_040--Hb_010042_020 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_000009_060--Hb_000703_330 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_007416_070 Hb_007416_070 Hb_000009_060--Hb_007416_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11159 9.11586 20.0467 38.5024 11.1264 9.1988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99005 9.07578 7.97976 18.8104 18.0421

CAGE analysis