Hb_010042_020

Information

Type -
Description -
Location Contig10042: 30020-33609
Sequence    

Annotation

kegg
ID rcu:RCOM_0061330
description UDP-n-acteylglucosamine pyrophosphorylase, putative (EC:1.3.1.74)
nr
ID XP_002533424.1
description UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5A5
description UDP-n-acteylglucosamine pyrophosphorylase, putative OS=Ricinus communis GN=RCOM_0061330 PE=4 SV=1
Gene Ontology
ID GO:0003977
description udp-n-acetylglucosamine diphosphorylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00305: 29881-52702 , PASA_asmbl_00307: 31231-31507
cDNA
(Sanger)
(ID:Location)		 012_B20.ab1: 31134-48827 , 025_B24.ab1: 31022-48827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010042_020 0.0 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
2 Hb_033152_070 0.058749893 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
3 Hb_003207_020 0.0822482597 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_000928_190 0.0858667686 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
5 Hb_001486_040 0.0869593331 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
6 Hb_004525_040 0.0873570834 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
7 Hb_000107_110 0.0884693515 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001481_150 0.1009542175 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
9 Hb_003052_180 0.1024866931 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
10 Hb_005701_120 0.106579913 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
11 Hb_004881_030 0.1077410176 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
12 Hb_148130_020 0.108591951 - - -
13 Hb_000800_090 0.1095908093 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
14 Hb_019280_020 0.1113202279 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
15 Hb_004607_070 0.1133642316 - - integral membrane protein, putative [Ricinus communis]
16 Hb_012707_040 0.1142768148 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
17 Hb_001946_310 0.1150260932 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
18 Hb_000402_130 0.1159765568 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_000003_310 0.1172608865 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
20 Hb_001104_130 0.1173453966 - - C-14 sterol reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010042_020 Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_003207_020--Hb_001486_040 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_001481_150 Hb_001481_150 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_185830_060 Hb_185830_060 Hb_001486_040--Hb_185830_060 Hb_001486_040--Hb_033152_070 Hb_002193_060 Hb_002193_060 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_001894_070 Hb_001894_070 Hb_000107_110--Hb_001894_070 Hb_004881_030 Hb_004881_030 Hb_000107_110--Hb_004881_030 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_000107_110--Hb_003052_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88399 17.2759 20.2968 83.8007 7.20523 19.4511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0455 17.507 15.3795 36.5136 38.2353

CAGE analysis