Hb_001894_070

Information

Type -
Description -
Location Contig1894: 87034-87894
Sequence    

Annotation

kegg
ID rcu:RCOM_0528110
description hypothetical protein
nr
ID XP_012085388.1
description PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZUD9
description Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1
trembl
ID A0A067K466
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17747 PE=4 SV=1
Gene Ontology
ID GO:0003950
description probable inactive poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18811: 87611-87920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_070 0.0 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
2 Hb_000107_110 0.0699763611 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_091349_010 0.1199226766 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
4 Hb_010042_020 0.1234604621 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
5 Hb_000671_130 0.1246282902 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
6 Hb_004881_030 0.1300403003 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
7 Hb_003052_180 0.1381867555 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
8 Hb_003606_060 0.1401714587 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
9 Hb_003994_300 0.1406953992 - - conserved hypothetical protein [Ricinus communis]
10 Hb_122636_010 0.140774673 - - dienelactone hydrolase family protein [Populus trichocarpa]
11 Hb_033152_070 0.14135212 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
12 Hb_001104_130 0.1435400409 - - C-14 sterol reductase, putative [Ricinus communis]
13 Hb_004525_040 0.1463332725 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
14 Hb_000586_030 0.1463458971 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
15 Hb_010577_010 0.147497439 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
16 Hb_002955_020 0.1484356967 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_000684_310 0.15121718 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
18 Hb_000035_330 0.1516355187 - - Transmembrane protein 85 [Theobroma cacao]
19 Hb_005701_120 0.151791994 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_000665_180 0.1531887791 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001894_070 Hb_001894_070 Hb_000107_110 Hb_000107_110 Hb_001894_070--Hb_000107_110 Hb_091349_010 Hb_091349_010 Hb_001894_070--Hb_091349_010 Hb_010042_020 Hb_010042_020 Hb_001894_070--Hb_010042_020 Hb_000671_130 Hb_000671_130 Hb_001894_070--Hb_000671_130 Hb_004881_030 Hb_004881_030 Hb_001894_070--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_001894_070--Hb_003052_180 Hb_000107_110--Hb_004881_030 Hb_000107_110--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_000107_110--Hb_033152_070 Hb_001104_130 Hb_001104_130 Hb_000107_110--Hb_001104_130 Hb_000107_110--Hb_003052_180 Hb_091349_010--Hb_000671_130 Hb_010577_010 Hb_010577_010 Hb_091349_010--Hb_010577_010 Hb_091349_010--Hb_000107_110 Hb_091349_010--Hb_033152_070 Hb_091349_010--Hb_004881_030 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_122636_010 Hb_122636_010 Hb_000671_130--Hb_122636_010 Hb_000671_130--Hb_003207_020 Hb_000671_130--Hb_033152_070 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060 Hb_004881_030--Hb_001104_130 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_004881_030--Hb_003052_180 Hb_004881_030--Hb_033152_070 Hb_004881_030--Hb_000928_190 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20255 0.853512 1.19616 5.30564 0.541853 1.96672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.890484 1.25993 1.11491 1.28566 2.607

CAGE analysis