Hb_048476_060

Information

Type -
Description -
Location Contig48476: 38309-49068
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010607mg
description hypothetical protein
nr
ID XP_012072318.1
description PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
swissprot
ID P33324
description CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2
trembl
ID A0A067L0V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44942: 38368-48900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_060 0.0 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
2 Hb_002193_060 0.1042699032 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
3 Hb_185830_060 0.1045562209 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
4 Hb_003207_020 0.1085572089 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
5 Hb_000110_050 0.1089152987 - - -
6 Hb_000402_130 0.1092161366 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_002007_320 0.1110720227 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
8 Hb_001486_040 0.112068328 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
9 Hb_000062_090 0.1129908107 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
10 Hb_004158_020 0.1159582296 - - Rab1 [Hevea brasiliensis]
11 Hb_005701_120 0.1187376095 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
12 Hb_000671_130 0.1198116388 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
13 Hb_012305_130 0.1218674773 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
14 Hb_002110_100 0.1223531434 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_000017_260 0.1242383107 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
16 Hb_003994_030 0.1245407365 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
17 Hb_007894_010 0.1256190988 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
18 Hb_000665_180 0.1266691123 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_000049_160 0.1276973494 - - tyrosine decarboxylase family protein [Populus trichocarpa]
20 Hb_021409_080 0.129817036 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_060 Hb_048476_060 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_000110_050 Hb_000110_050 Hb_048476_060--Hb_000110_050 Hb_000402_130 Hb_000402_130 Hb_048476_060--Hb_000402_130 Hb_002007_320 Hb_002007_320 Hb_048476_060--Hb_002007_320 Hb_002193_060--Hb_185830_060 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_003207_020--Hb_033152_070 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_003207_020--Hb_000402_130 Hb_003207_020--Hb_005701_120 Hb_002811_280 Hb_002811_280 Hb_000110_050--Hb_002811_280 Hb_000110_050--Hb_000402_130 Hb_012305_130 Hb_012305_130 Hb_000110_050--Hb_012305_130 Hb_001817_100 Hb_001817_100 Hb_000110_050--Hb_001817_100 Hb_002110_100 Hb_002110_100 Hb_000110_050--Hb_002110_100 Hb_000402_130--Hb_005701_120 Hb_000402_130--Hb_033152_070 Hb_000402_130--Hb_002110_100 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_002007_320--Hb_002193_060 Hb_003371_070 Hb_003371_070 Hb_002007_320--Hb_003371_070 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_000023_310 Hb_000023_310 Hb_002007_320--Hb_000023_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36167 11.8721 36.2556 85.9447 7.24476 8.70306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9683 23.8296 18.766 26.2705 29.2029

CAGE analysis