Hb_000110_050

Information

Type -
Description -
Location Contig110: 107189-108423
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03039: 107184-111139 , PASA_asmbl_03042: 107807-108657
cDNA
(Sanger)
(ID:Location)		 001_P21.ab1: 107184-109380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_050 0.0 - - -
2 Hb_002811_280 0.1051513108 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
3 Hb_048476_060 0.1089152987 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
4 Hb_000402_130 0.1119290426 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
5 Hb_012305_130 0.1134615019 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
6 Hb_001817_100 0.1166837 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
7 Hb_002110_100 0.116726735 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_002193_060 0.1171696555 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
9 Hb_000684_520 0.1188003191 - - glutathione S-transferase L3-like [Jatropha curcas]
10 Hb_001946_310 0.1197226613 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
11 Hb_007894_010 0.1217569565 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
12 Hb_001221_030 0.1220695496 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
13 Hb_004158_020 0.1254928449 - - Rab1 [Hevea brasiliensis]
14 Hb_000017_260 0.1263931074 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
15 Hb_002217_100 0.126421591 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
16 Hb_021943_090 0.1270231081 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
17 Hb_003994_030 0.1273826803 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
18 Hb_002007_320 0.1284009201 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
19 Hb_005701_120 0.1285880527 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
20 Hb_005276_040 0.1294818055 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000110_050 Hb_000110_050 Hb_002811_280 Hb_002811_280 Hb_000110_050--Hb_002811_280 Hb_048476_060 Hb_048476_060 Hb_000110_050--Hb_048476_060 Hb_000402_130 Hb_000402_130 Hb_000110_050--Hb_000402_130 Hb_012305_130 Hb_012305_130 Hb_000110_050--Hb_012305_130 Hb_001817_100 Hb_001817_100 Hb_000110_050--Hb_001817_100 Hb_002110_100 Hb_002110_100 Hb_000110_050--Hb_002110_100 Hb_001769_060 Hb_001769_060 Hb_002811_280--Hb_001769_060 Hb_010172_110 Hb_010172_110 Hb_002811_280--Hb_010172_110 Hb_000172_280 Hb_000172_280 Hb_002811_280--Hb_000172_280 Hb_002007_320 Hb_002007_320 Hb_002811_280--Hb_002007_320 Hb_001616_070 Hb_001616_070 Hb_002811_280--Hb_001616_070 Hb_002193_060 Hb_002193_060 Hb_048476_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_048476_060--Hb_185830_060 Hb_003207_020 Hb_003207_020 Hb_048476_060--Hb_003207_020 Hb_048476_060--Hb_000402_130 Hb_048476_060--Hb_002007_320 Hb_005701_120 Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_000402_130--Hb_002110_100 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_021409_080 Hb_021409_080 Hb_012305_130--Hb_021409_080 Hb_000110_120 Hb_000110_120 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_012305_130--Hb_002110_100 Hb_004627_030 Hb_004627_030 Hb_012305_130--Hb_004627_030 Hb_007590_090 Hb_007590_090 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_002615_030 Hb_002615_030 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_001817_100--Hb_002007_320 Hb_001998_200 Hb_001998_200 Hb_001817_100--Hb_001998_200 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002110_100--Hb_005701_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.555658 0.710883 2.79505 4.57836 0.493258 0.474001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59422 1.7218 2.00414 2.8169 1.65065

CAGE analysis