Hb_010172_110

Information

Type -
Description -
Location Contig10172: 108690-111140
Sequence    

Annotation

kegg
ID rcu:RCOM_1288930
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002531066.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYJ7
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1288930 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal transport detoxification superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00823: 108921-111406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_110 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_000331_350 0.1024696807 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
3 Hb_007002_040 0.1068186232 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
4 Hb_000189_170 0.1265814954 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_002811_280 0.1436452366 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
6 Hb_000310_120 0.1468065203 - - PREDICTED: probable transaldolase [Jatropha curcas]
7 Hb_001329_070 0.1475045964 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
8 Hb_001817_100 0.1482957401 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
9 Hb_000206_230 0.1544546214 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004650_030 0.1548485491 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
11 Hb_000406_030 0.1574342506 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
12 Hb_002007_320 0.1576222292 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
13 Hb_002284_220 0.1587260205 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
14 Hb_003055_110 0.16046586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_188281_030 0.163020179 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
16 Hb_000110_050 0.1631615256 - - -
17 Hb_002627_020 0.1643444926 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
18 Hb_124677_030 0.1709053525 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
19 Hb_002486_020 0.1754847557 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003371_070 0.1826937359 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_010172_110 Hb_010172_110 Hb_000331_350 Hb_000331_350 Hb_010172_110--Hb_000331_350 Hb_007002_040 Hb_007002_040 Hb_010172_110--Hb_007002_040 Hb_000189_170 Hb_000189_170 Hb_010172_110--Hb_000189_170 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_188281_030 Hb_188281_030 Hb_000331_350--Hb_188281_030 Hb_000331_350--Hb_000310_120 Hb_002007_320 Hb_002007_320 Hb_000331_350--Hb_002007_320 Hb_000057_110 Hb_000057_110 Hb_000331_350--Hb_000057_110 Hb_000406_030 Hb_000406_030 Hb_000331_350--Hb_000406_030 Hb_007002_040--Hb_000189_170 Hb_007002_040--Hb_000331_350 Hb_000086_670 Hb_000086_670 Hb_007002_040--Hb_000086_670 Hb_028872_160 Hb_028872_160 Hb_007002_040--Hb_028872_160 Hb_124677_030 Hb_124677_030 Hb_007002_040--Hb_124677_030 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_000110_050 Hb_000110_050 Hb_002811_280--Hb_000110_050 Hb_001769_060 Hb_001769_060 Hb_002811_280--Hb_001769_060 Hb_000172_280 Hb_000172_280 Hb_002811_280--Hb_000172_280 Hb_002811_280--Hb_002007_320 Hb_001616_070 Hb_001616_070 Hb_002811_280--Hb_001616_070 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_013405_070 Hb_013405_070 Hb_000310_120--Hb_013405_070 Hb_000206_230 Hb_000206_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_002027_440 Hb_002027_440 Hb_001329_070--Hb_002027_440 Hb_011242_050 Hb_011242_050 Hb_001329_070--Hb_011242_050 Hb_001329_070--Hb_013405_070 Hb_003602_060 Hb_003602_060 Hb_001329_070--Hb_003602_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.842991 1.77713 19.6382 18.3378 0.422353 0.485487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71166 5.85494 5.91432 11.4334 8.35056

CAGE analysis