Hb_000310_120

Information

Type -
Description -
Location Contig310: 160169-165846
Sequence    

Annotation

kegg
ID pmum:103337230
description probable transaldolase
nr
ID XP_012087136.1
description PREDICTED: probable transaldolase [Jatropha curcas]
swissprot
ID B0UV30
description Transaldolase OS=Histophilus somni (strain 2336) GN=tal PE=3 SV=1
trembl
ID A0A067JNS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20787 PE=3 SV=1
Gene Ontology
ID GO:0016740
description probable transaldolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32830: 160188-165767 , PASA_asmbl_32831: 160265-165749 , PASA_asmbl_32832: 160331-165658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000310_120 0.0 - - PREDICTED: probable transaldolase [Jatropha curcas]
2 Hb_000406_030 0.104632375 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
3 Hb_003680_220 0.1141260763 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
4 Hb_000589_170 0.1141868111 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
5 Hb_000500_220 0.1188521334 - - PREDICTED: intersectin-1 [Jatropha curcas]
6 Hb_008725_270 0.1204817758 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
7 Hb_013405_070 0.1218436411 - - ferric-chelate reductase, putative [Ricinus communis]
8 Hb_002016_140 0.1232392633 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
9 Hb_001587_040 0.1242057271 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
10 Hb_001232_090 0.1270856826 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
11 Hb_000331_350 0.1275823609 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
12 Hb_003050_360 0.1299002009 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
13 Hb_001754_050 0.1304546309 - - protein arginine n-methyltransferase, putative [Ricinus communis]
14 Hb_000566_010 0.1324429201 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_000392_250 0.1336816563 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
16 Hb_000172_280 0.133707405 - - aspartate aminotransferase, putative [Ricinus communis]
17 Hb_009296_020 0.1339828809 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
18 Hb_001009_140 0.1340380973 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
19 Hb_000206_230 0.1340999783 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007416_110 0.1350339668 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000310_120 Hb_000310_120 Hb_000406_030 Hb_000406_030 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_013405_070 Hb_013405_070 Hb_000310_120--Hb_013405_070 Hb_001232_090 Hb_001232_090 Hb_000406_030--Hb_001232_090 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_000500_220--Hb_000926_060 Hb_000500_220--Hb_008725_270 Hb_000500_220--Hb_002687_200 Hb_011671_120 Hb_011671_120 Hb_000500_220--Hb_011671_120 Hb_000500_220--Hb_009296_020 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_008725_270--Hb_000926_060 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_013405_070--Hb_008725_270 Hb_013405_070--Hb_001232_090 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69448 6.03501 26.5949 20.3207 1.78238 1.32083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10366 6.01877 4.71226 16.3401 17.0039

CAGE analysis