Hb_013405_070

Information

Type -
Description -
Location Contig13405: 33858-42090
Sequence    

Annotation

kegg
ID rcu:RCOM_1582800
description ferric-chelate reductase, putative (EC:1.6.3.1)
nr
ID XP_002513661.1
description ferric-chelate reductase, putative [Ricinus communis]
swissprot
ID P92949
description Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2
trembl
ID B9RIU2
description Ferric-chelate reductase, putative OS=Ricinus communis GN=RCOM_1582800 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ferric reduction oxidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09659: 33855-36326 , PASA_asmbl_09660: 41224-41543
cDNA
(Sanger)
(ID:Location)		 031_D21.ab1: 33855-34841 , 035_E07.ab1: 35986-36238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_070 0.0 - - ferric-chelate reductase, putative [Ricinus communis]
2 Hb_000800_020 0.0884769206 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
3 Hb_011671_340 0.0914968421 - - small GTPase [Hevea brasiliensis]
4 Hb_008725_270 0.1042144618 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
5 Hb_001232_090 0.1057096892 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_000589_170 0.1084145606 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
7 Hb_003894_030 0.1106210863 - - plant sec1, putative [Ricinus communis]
8 Hb_003271_040 0.1106943761 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
9 Hb_003740_020 0.1113650103 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_029253_010 0.1142672522 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_001587_040 0.115507874 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
12 Hb_001155_050 0.1158564064 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
13 Hb_000566_010 0.1160038584 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_001863_070 0.116428121 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
15 Hb_011381_040 0.1175948424 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
16 Hb_005511_130 0.1191795616 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
17 Hb_003050_360 0.119396283 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
18 Hb_000375_300 0.1209123152 - - PREDICTED: cyanate hydratase [Jatropha curcas]
19 Hb_006588_190 0.1210113105 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
20 Hb_001329_070 0.121354213 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_013405_070 Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_006588_190 Hb_006588_190 Hb_000800_020--Hb_006588_190 Hb_000800_020--Hb_011671_340 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_011381_040 Hb_011381_040 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_001155_050 Hb_001155_050 Hb_011671_340--Hb_001155_050 Hb_007426_220 Hb_007426_220 Hb_011671_340--Hb_007426_220 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_029253_010 Hb_029253_010 Hb_011671_340--Hb_029253_010 Hb_003680_220 Hb_003680_220 Hb_008725_270--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_002687_200 Hb_002687_200 Hb_008725_270--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_008725_270--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_008725_270--Hb_000500_220 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_003740_020 Hb_003740_020 Hb_003894_030--Hb_003740_020 Hb_002374_270 Hb_002374_270 Hb_003894_030--Hb_002374_270 Hb_003894_030--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49013 3.23008 14.2054 10.5355 1.29533 1.04042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71481 3.73198 2.43252 4.01831 6.8034

CAGE analysis