Hb_005271_140

Information

Type transcription factor
Description TF Family: LIM
Location Contig5271: 91097-107435
Sequence    

Annotation

kegg
ID rcu:RCOM_1686130
description Pollen-specific protein SF3, putative
nr
ID XP_010089139.1
description Pollen-specific protein SF3 [Morus notabilis]
swissprot
ID Q500W4
description LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1
trembl
ID W9R3C7
description Pollen-specific protein SF3 OS=Morus notabilis GN=L484_024314 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47056: 91006-101617 , PASA_asmbl_47057: 91242-101743
cDNA
(Sanger)
(ID:Location)		 015_B23.ab1: 90998-92336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_140 0.0 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
2 Hb_006970_130 0.101009666 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
3 Hb_001232_090 0.110642799 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
4 Hb_010534_020 0.1197580868 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
5 Hb_000684_120 0.131932665 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
6 Hb_000757_130 0.1371757346 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000563_440 0.1408478404 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
8 Hb_003740_020 0.1451649678 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000190_220 0.1460878761 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
10 Hb_029253_010 0.1462926925 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_001377_530 0.148786252 - - NC domain-containing family protein [Populus trichocarpa]
12 Hb_001141_050 0.1529840375 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
13 Hb_003894_030 0.1546381556 - - plant sec1, putative [Ricinus communis]
14 Hb_001123_110 0.1547762189 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004155_020 0.155248016 transcription factor TF Family: MYB myb, putative [Ricinus communis]
16 Hb_000077_110 0.1566275334 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
17 Hb_000288_090 0.1568960032 - - unnamed protein product [Vitis vinifera]
18 Hb_001123_310 0.1570559663 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
19 Hb_000940_210 0.1580808629 - - cyclophilin [Hevea brasiliensis]
20 Hb_004968_040 0.1609909916 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005271_140 Hb_005271_140 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_001232_090 Hb_001232_090 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_000392_250 Hb_000392_250 Hb_010534_020--Hb_000392_250 Hb_000300_100 Hb_000300_100 Hb_010534_020--Hb_000300_100 Hb_010534_020--Hb_001232_090 Hb_010534_020--Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_010534_020--Hb_029253_010 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000684_120--Hb_000563_440 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_000757_130--Hb_029253_010 Hb_000922_320 Hb_000922_320 Hb_000757_130--Hb_000922_320 Hb_000589_170 Hb_000589_170 Hb_000757_130--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_000757_130--Hb_001155_050 Hb_004679_040 Hb_004679_040 Hb_000757_130--Hb_004679_040 Hb_002374_270 Hb_002374_270 Hb_000757_130--Hb_002374_270 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_000563_440--Hb_004155_020 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04378 2.74714 17.4371 11.1218 1.12573 0.476472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53051 1.83 0.537382 4.18023 3.85265

CAGE analysis