Hb_000684_120

Information

Type -
Description -
Location Contig684: 186787-190046
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13270g
description hypothetical protein
nr
ID XP_012082312.1
description PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16479 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53972: 186863-188038 , PASA_asmbl_53974: 191045-204209 , PASA_asmbl_53975: 188144-189656 , PASA_asmbl_53976: 188144-193639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_120 0.0 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
2 Hb_030627_070 0.1233938327 - - histone H4 [Zea mays]
3 Hb_000563_440 0.124074519 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
4 Hb_005271_140 0.131932665 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
5 Hb_001232_090 0.1352548131 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
6 Hb_124677_030 0.1419660492 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
7 Hb_004449_040 0.1435707296 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
8 Hb_000005_110 0.1455211144 - - histone H2B1 [Hevea brasiliensis]
9 Hb_002411_060 0.1503020184 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
10 Hb_002235_380 0.1551670646 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
11 Hb_000139_280 0.1559548936 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
12 Hb_188281_030 0.1577460509 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
13 Hb_000364_170 0.1581386574 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
14 Hb_002307_020 0.1581672013 - - PREDICTED: histone H1-like [Jatropha curcas]
15 Hb_006275_060 0.1584756216 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
16 Hb_021495_010 0.1616781027 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002027_440 0.1628986082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004117_190 0.1629924107 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
19 Hb_011381_040 0.1639448261 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
20 Hb_010534_020 0.1653707116 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_120 Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000563_440 Hb_000563_440 Hb_000684_120--Hb_000563_440 Hb_005271_140 Hb_005271_140 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_003399_100 Hb_003399_100 Hb_030627_070--Hb_003399_100 Hb_002045_190 Hb_002045_190 Hb_030627_070--Hb_002045_190 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_006275_060 Hb_006275_060 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_005903_020 Hb_005903_020 Hb_001232_090--Hb_005903_020 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_001232_090--Hb_004155_020 Hb_188281_030 Hb_188281_030 Hb_124677_030--Hb_188281_030 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_000345_460 Hb_000345_460 Hb_124677_030--Hb_000345_460 Hb_124677_030--Hb_001232_090 Hb_124677_030--Hb_010534_020 Hb_004449_040--Hb_000563_440 Hb_001114_170 Hb_001114_170 Hb_004449_040--Hb_001114_170 Hb_004449_040--Hb_005271_140 Hb_101146_010 Hb_101146_010 Hb_004449_040--Hb_101146_010 Hb_002411_060 Hb_002411_060 Hb_004449_040--Hb_002411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.787106 0.531715 7.34704 3.65712 0.446712 0.481507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.581 1.59904 0.386797 1.64699 1.2913

CAGE analysis