Hb_000345_460

Information

Type -
Description -
Location Contig345: 372749-378188
Sequence    

Annotation

kegg
ID rcu:RCOM_1431460
description mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative (EC:1.3.1.74)
nr
ID XP_012089064.1
description PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
swissprot
ID Q40541
description Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum GN=NPK1 PE=1 SV=1
trembl
ID B9RF57
description Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative OS=Ricinus communis GN=RCOM_1431460 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_460 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
2 Hb_188281_030 0.1155344015 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
3 Hb_002027_440 0.1175742803 - - conserved hypothetical protein [Ricinus communis]
4 Hb_124677_030 0.1230424546 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
5 Hb_000005_110 0.1253272529 - - histone H2B1 [Hevea brasiliensis]
6 Hb_011242_050 0.1326689802 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
7 Hb_001221_030 0.156249256 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
8 Hb_000282_050 0.1609249117 - - calcineurin B, putative [Ricinus communis]
9 Hb_000364_170 0.1623501194 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
10 Hb_005054_220 0.1626133609 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
11 Hb_001863_070 0.1631985532 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
12 Hb_002960_090 0.1635338958 - - protein with unknown function [Ricinus communis]
13 Hb_007850_030 0.1646477622 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_006445_020 0.1653999263 - - hypothetical protein L484_026741 [Morus notabilis]
15 Hb_002693_030 0.1655451348 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
16 Hb_001329_070 0.1656913656 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
17 Hb_004117_190 0.1669645643 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
18 Hb_006711_090 0.1676148531 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
19 Hb_083380_020 0.1684075467 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_154038_020 0.1688145603 - - hypothetical protein JCGZ_05648 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_460 Hb_000345_460 Hb_188281_030 Hb_188281_030 Hb_000345_460--Hb_188281_030 Hb_002027_440 Hb_002027_440 Hb_000345_460--Hb_002027_440 Hb_124677_030 Hb_124677_030 Hb_000345_460--Hb_124677_030 Hb_000005_110 Hb_000005_110 Hb_000345_460--Hb_000005_110 Hb_011242_050 Hb_011242_050 Hb_000345_460--Hb_011242_050 Hb_001221_030 Hb_001221_030 Hb_000345_460--Hb_001221_030 Hb_188281_030--Hb_124677_030 Hb_000331_350 Hb_000331_350 Hb_188281_030--Hb_000331_350 Hb_000282_050 Hb_000282_050 Hb_188281_030--Hb_000282_050 Hb_188281_030--Hb_002027_440 Hb_188281_030--Hb_001221_030 Hb_002027_440--Hb_011242_050 Hb_001863_070 Hb_001863_070 Hb_002027_440--Hb_001863_070 Hb_001329_070 Hb_001329_070 Hb_002027_440--Hb_001329_070 Hb_013405_070 Hb_013405_070 Hb_002027_440--Hb_013405_070 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_000005_110--Hb_188281_030 Hb_000005_110--Hb_001221_030 Hb_011242_050--Hb_001863_070 Hb_011242_050--Hb_001329_070 Hb_000206_230 Hb_000206_230 Hb_011242_050--Hb_000206_230 Hb_011242_050--Hb_188281_030 Hb_000684_030 Hb_000684_030 Hb_001221_030--Hb_000684_030 Hb_000174_260 Hb_000174_260 Hb_001221_030--Hb_000174_260 Hb_005276_040 Hb_005276_040 Hb_001221_030--Hb_005276_040 Hb_003605_020 Hb_003605_020 Hb_001221_030--Hb_003605_020 Hb_000200_300 Hb_000200_300 Hb_001221_030--Hb_000200_300 Hb_000330_090 Hb_000330_090 Hb_001221_030--Hb_000330_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0502527 0.136311 0.986527 0.767922 0.0624924 0.230477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229184 0.541 0.155731 0.37804 0.277737

CAGE analysis